PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

SBP

Protein Properties

Length: 881aa MW: 98161.2 Da PI: 7.0286

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G029400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	121.8	3.1e-38	131	207	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+gC+adls a++yh+rhkvCe+h++++vv+++++e+rfCqqCsrfh l+efDe+k+sCr+rLakhn rrrk q+ Sevir.5G029400.2.p 131 CQVDGCHADLSGARDYHKRHKVCEAHTRTSVVCIKNVEHRFCQQCSRFHLLQEFDEGKKSCRSRLAKHNGRRRKGQP 207 **************************************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-31	123	192	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.718	128	205	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.83E-35	129	208	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-28	131	204	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.56E-5	652	759	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.11E-5	654	759	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MEAGFLWKES GDQAGAARMS GGHNKNKNKS LEWDLNDWRW DANLFLATPA AAAPSECSSR 60 ELSRAQGEID FGVVVDKRRR LSPEEDGSAG CSNDSAVANG DNGHVVSVQR RRSSEEERPR 120 KGASSSTPPS CQVDGCHADL SGARDYHKRH KVCEAHTRTS VVCIKNVEHR FCQQCSRFHL 180 LQEFDEGKKS CRSRLAKHNG RRRKGQPQGA VVGNPTNENK SLSSALFLLL KQLSGLESGS 240 SSGQINHPNY LVNLMKNLAA VASTQAYQDI LNNANSNPTS NAGNNAANGS TMHELTIQSI 300 PVGSEPLAGP PVKKRVQDFD LNDACIEEVE RRTDKIVFKL FGKEPKDFPV DLREQILNWL 360 SHCPTDMESY IRPGCVILTV YLRLPNWMWD ELDDDPAPWI EKLISMSNDG FWRTGWVYAR 420 VQECLTLSCN GRLILASPWQ PVIGDRLQRL CVTPIAVACS STAKFCVQGF NIVQPTTKLL 480 CVFGEKYLIQ EETQTLLEDT TRQQGRQCLT FSCSFPSTSG RGFIEVEDYD QSSLSVPFVV 540 TDKDVCSEIR MLEHELDLSS FDETSERIGD LMASRSRALH FLQEIGWLLQ RSHMQATSEQ 600 RQYSTEGFSV ERFRWLLSFA IDQEWCAVVN KLLNTMFRGD IGLDVPSPVE FALGENLLLT 660 AVNKRSKPLV QFLLRYTITN YAPDIDPVQF LFTPDMTGPS NITPLHIAAT ISDTTGVLDA 720 LTDDPQQLGI KVWKTARDDT GLTPEDYAQK RGHISYIQMV QDKIDRRLPK AHVSVAIPSR 780 PSATDTITKH ASHLKSTDQT AFDVEKSARS IINQPLSCGQ CVHQLAYRPR TNRFFSTRPA 840 MLSLVAIAAV CVCVGLIMKS PPQVSSMKPF LWEKITWGPN *

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MEAGFLWKES GDQAGAARMS GGHNKNKNKS LEWDLNDWRW DANLFLATPA AAAPSECSSR  60
ELSRAQGEID FGVVVDKRRR LSPEEDGSAG CSNDSAVANG DNGHVVSVQR RRSSEEERPR  120
KGASSSTPPS CQVDGCHADL SGARDYHKRH KVCEAHTRTS VVCIKNVEHR FCQQCSRFHL  180
LQEFDEGKKS CRSRLAKHNG RRRKGQPQGA VVGNPTNENK SLSSALFLLL KQLSGLESGS  240
SSGQINHPNY LVNLMKNLAA VASTQAYQDI LNNANSNPTS NAGNNAANGS TMHELTIQSI  300
PVGSEPLAGP PVKKRVQDFD LNDACIEEVE RRTDKIVFKL FGKEPKDFPV DLREQILNWL  360
SHCPTDMESY IRPGCVILTV YLRLPNWMWD ELDDDPAPWI EKLISMSNDG FWRTGWVYAR  420
VQECLTLSCN GRLILASPWQ PVIGDRLQRL CVTPIAVACS STAKFCVQGF NIVQPTTKLL  480
CVFGEKYLIQ EETQTLLEDT TRQQGRQCLT FSCSFPSTSG RGFIEVEDYD QSSLSVPFVV  540
TDKDVCSEIR MLEHELDLSS FDETSERIGD LMASRSRALH FLQEIGWLLQ RSHMQATSEQ  600
RQYSTEGFSV ERFRWLLSFA IDQEWCAVVN KLLNTMFRGD IGLDVPSPVE FALGENLLLT  660
AVNKRSKPLV QFLLRYTITN YAPDIDPVQF LFTPDMTGPS NITPLHIAAT ISDTTGVLDA  720
LTDDPQQLGI KVWKTARDDT GLTPEDYAQK RGHISYIQMV QDKIDRRLPK AHVSVAIPSR  780
PSATDTITKH ASHLKSTDQT AFDVEKSARS IINQPLSCGQ CVHQLAYRPR TNRFFSTRPA  840
MLSLVAIAAV CVCVGLIMKS PPQVSSMKPF LWEKITWGPN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-25	123	204	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	80	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G029400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014660814.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A368R0M4	0.0	A0A368R0M4_SETIT; Uncharacterized protein
STRING	Si000259m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-135	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	Sevir.5G029400.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]