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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.5G024000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
MYB |
Protein Properties |
Length: 341aa MW: 36978.3 Da PI: 4.6661 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.5G024000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.3 | 6.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+grWT+eEde+l +++k++G g+W++ ++ g+ R++k+c++rw +yl
Sevir.5G024000.1.p 14 KGRWTKEEDEILGRYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
79******************************99************97 PP
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2 | Myb_DNA-binding | 54.3 | 3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ ++eE+e ++++++ lG++ W++Ia +++ gRt++++k++w+++l
Sevir.5G024000.1.p 67 RGNISEEEEEMIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
7899******************.*********.************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MGRAPCCEKV GLKKGRWTKE EDEILGRYIK EHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SEEEEEMIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRAADFR 120 DGVVVNVDLS KLPGGGKRRG GRASRGIMAA AKAGKEKKVK EKEKDKGKNK AAEAEQQLKL 180 EEEDMAVSTP SSHSQPCATD KSGEEQAQAS ASGVTSDDGP EEDPLALSEE MMSALLGPVS 240 PKLEVGPDGS GMDSDSGPSS LVVDSESGPG GPTGDVAQEL GENDKAIMDW DLMGLDISTA 300 GDMWDPLVWD YADMDIVVPD GGHQQQQEDV VSDLFFLDNM *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HF679411 | 0.0 | HF679411.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB5 protein. |