PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G003100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | G2-like | ||||||||
Protein Properties | Length: 464aa MW: 49340 Da PI: 6.398 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.1 | 3.9e-28 | 181 | 235 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G++kA+P++ile+m+++gLt+++++SHLQkYR++ Sevir.5G003100.1.p 181 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIEGLTRHNIASHLQKYRSH 235 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.389 | 178 | 237 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-27 | 179 | 238 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-18 | 180 | 238 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-26 | 181 | 235 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-8 | 184 | 233 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MLEVSSLRSP SKAADQRGFV GDHVGFPTSA GTDDFMVDDN LLDYIDFSSC CDMPFFDADG 60 DILPDLEVDP TESLLAEFSS PETSPAAADG GGGAEAKPPD EKQEQVAAKT AAAEETKADD 120 DEKTAAGGVV VTRKRNGDEV TTTEEDSAGA GAGSDTKSSA AAGGHSKKKA SAGKDSNGKR 180 KVKVDWTPEL HRRFVQAVEQ LGIDKAVPSR ILEIMGIEGL TRHNIASHLQ KYRSHRKHLM 240 AREAEAATWA QKRQLYAAAP VARKVEAAAA AGPPWVVPTI GFPPPPPPAM APPPPPFCRP 300 LHVWGHPPTA AVEAPATMLP VWPRHLAPPR PWVDPGYWHQ QYNAGRTKWA PPQAAVTQGT 360 PCVPPPPAMV QLPRFPHPMY SRPPVMVPPP PPPPTTTTTK LAELQLQLDA HPSKESIDAA 420 IGDVLVKPWL PLPLGLKPPS LDSVMSELHK QGIPKIPPAS STG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-16 | 186 | 237 | 6 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G003100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF318579 | 1e-100 | AF318579.1 Zea mays putative transcription factor GOLDEN 2 mRNA, complete cds. | |||
GenBank | BT062838 | 1e-100 | BT062838.1 Zea mays full-length cDNA clone ZM_BFb0374G22 mRNA, complete cds. | |||
GenBank | EU956792 | 1e-100 | EU956792.1 Zea mays clone 1574106 transcription factor ZmGLK1 mRNA, complete cds. | |||
GenBank | KJ727689 | 1e-100 | KJ727689.1 Zea mays clone pUT5628 G2-like transcription factor (GLK13) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967344.1 | 0.0 | probable transcription factor GLK2 | ||||
Swissprot | Q5NAN5 | 1e-117 | GLK2_ORYSJ; Probable transcription factor GLK2 | ||||
TrEMBL | K3XHG5 | 0.0 | K3XHG5_SETIT; Uncharacterized protein | ||||
STRING | Si001336m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 3e-54 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G003100.1.p |
Publications ? help Back to Top | |||
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