PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G304100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 234aa    MW: 24278.2 Da    PI: 8.7119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G304100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001392114123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+k+F++   L  H  +H
  Sevir.4G304100.1.p  92 YECKTCNKCFPSFQALGGHRTSH 114
                         99**********99998888777 PP

2zf-C2H2110.0013154176123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg +F +   L  H+r+H
  Sevir.4G304100.1.p 154 HECSACGATFASGQALGGHMRRH 176
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.84E-892114No hitNo description
PfamPF139121.0E-992114IPR007087Zinc finger, C2H2
SMARTSM003550.1192114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.19892119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576674.84E-8149176No hitNo description
PfamPF139129.6E-12153177IPR007087Zinc finger, C2H2
SMARTSM003550.041154176IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.889154176IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MATPPAYIAG AHKQRAKRRR QCSSLPSPAS SSSSHSGSTT TQQEEEDEAA DMAKCLILLA  60
QGPAATVMEP AMPVPVPAPP RPTTTQRPPS SYECKTCNKC FPSFQALGGH RTSHNNDKIK  120
KPRRPEAEAA AAAAVTTTLS LRTAAVAGRP AAAHECSACG ATFASGQALG GHMRRHRPLT  180
AGAAPESVVT AEETSAGGNN VSLELDLNLL PAPSTEQEVT SPALATKRTH HFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G304100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681943.11e-128zinc finger protein ZAT11-like
TrEMBLA0A368QZW91e-128A0A368QZW9_SETIT; Uncharacterized protein
STRINGSi008395m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-21C2H2 family protein