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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G304100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 234aa MW: 24278.2 Da PI: 8.7119 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0013 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Sevir.4G304100.1.p 92 YECKTCNKCFPSFQALGGHRTSH 114 99**********99998888777 PP | |||||||
2 | zf-C2H2 | 11 | 0.0013 | 154 | 176 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F + L H+r+H Sevir.4G304100.1.p 154 HECSACGATFASGQALGGHMRRH 176 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.84E-8 | 92 | 114 | No hit | No description |
Pfam | PF13912 | 1.0E-9 | 92 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.198 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.84E-8 | 149 | 176 | No hit | No description |
Pfam | PF13912 | 9.6E-12 | 153 | 177 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.041 | 154 | 176 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.889 | 154 | 176 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 156 | 176 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MATPPAYIAG AHKQRAKRRR QCSSLPSPAS SSSSHSGSTT TQQEEEDEAA DMAKCLILLA 60 QGPAATVMEP AMPVPVPAPP RPTTTQRPPS SYECKTCNKC FPSFQALGGH RTSHNNDKIK 120 KPRRPEAEAA AAAAVTTTLS LRTAAVAGRP AAAHECSACG ATFASGQALG GHMRRHRPLT 180 AGAAPESVVT AEETSAGGNN VSLELDLNLL PAPSTEQEVT SPALATKRTH HFN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G304100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681943.1 | 1e-128 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A368QZW9 | 1e-128 | A0A368QZW9_SETIT; Uncharacterized protein | ||||
STRING | Si008395m | 1e-128 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 6e-21 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G304100.1.p |