PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G289300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | SRS | ||||||||
Protein Properties | Length: 337aa MW: 33457 Da PI: 8.7735 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 215.1 | 1.6e-66 | 111 | 269 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkq.sal 86 ++sCqdCGn+akkdCah+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ + aa+++ a+aaskr+rel + + Sevir.4G289300.1.p 111 AGTSCQDCGNNAKKDCAHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFRGAANNSasaaaaaAAAASKRPRELVRSLGrLPS 201 4579****************************************************99998887777777777788888887333220223 PP DUF702 87 sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ ++++++++ ++P+e+s+eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++ Sevir.4G289300.1.p 202 ANSAMVTTTTSSGDGGGRFPPELSVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 269 333344444455667778***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.3E-63 | 112 | 268 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.2E-25 | 114 | 156 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.6E-18 | 219 | 267 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MAGFSLRGGG GGGGGRGGER GGDHPIGADS LFLYARGAAA AAADTAASGG GGGGIGFQLW 60 HPHQQAAAAA PHTSQFFSSG VATGVVLGFS SHDGSGGIGG PGSGGAGGGR AGTSCQDCGN 120 NAKKDCAHMR CRTCCRSRGF SCPTHVKSTW VPAAKRRERQ QQLAALFRGA ANNSASAAAA 180 AAAAASKRPR ELVRSLGRLP SANSAMVTTT TSSGDGGGRF PPELSVEAVF RCVRIGPVDE 240 PDAELAYQTA VSIGGHTFKG ILRDHGPADD AAVGQLPPSS EYHQLTGQAR EGSSPAGSSE 300 AAATVATSAA VLMDPYPTPI GAFAAGTQFF PHNPRT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 15 | RGGGGGGGGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G289300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004329 | 1e-177 | AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12. | |||
GenBank | AP005463 | 1e-177 | AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01. | |||
GenBank | AP014962 | 1e-177 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012700884.1 | 1e-165 | protein SHI RELATED SEQUENCE 1 | ||||
Refseq | XP_022681542.1 | 1e-165 | protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A2T7DU75 | 1e-164 | A0A2T7DU75_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J38504.1.p | 1e-165 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 2e-53 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G289300.1.p |