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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sevir.4G289300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
SRS |
| Protein Properties |
Length: 337aa MW: 33457 Da PI: 8.7735 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.4G289300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 215.1 | 1.6e-66 | 111 | 269 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkq.sal 86
++sCqdCGn+akkdCah+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ + aa+++ a+aaskr+rel + +
Sevir.4G289300.1.p 111 AGTSCQDCGNNAKKDCAHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFRGAANNSasaaaaaAAAASKRPRELVRSLGrLPS 201
4579****************************************************99998887777777777788888887333220223 PP
DUF702 87 sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+++ ++++++++ ++P+e+s+eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++
Sevir.4G289300.1.p 202 ANSAMVTTTTSSGDGGGRFPPELSVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 269
333344444455667778***********************************************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MAGFSLRGGG GGGGGRGGER GGDHPIGADS LFLYARGAAA AAADTAASGG GGGGIGFQLW 60
HPHQQAAAAA PHTSQFFSSG VATGVVLGFS SHDGSGGIGG PGSGGAGGGR AGTSCQDCGN 120
NAKKDCAHMR CRTCCRSRGF SCPTHVKSTW VPAAKRRERQ QQLAALFRGA ANNSASAAAA 180
AAAAASKRPR ELVRSLGRLP SANSAMVTTT TSSGDGGGRF PPELSVEAVF RCVRIGPVDE 240
PDAELAYQTA VSIGGHTFKG ILRDHGPADD AAVGQLPPSS EYHQLTGQAR EGSSPAGSSE 300
AAATVATSAA VLMDPYPTPI GAFAAGTQFF PHNPRT*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP004329 | 1e-177 | AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12. |
| GenBank | AP005463 | 1e-177 | AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01. |
| GenBank | AP014962 | 1e-177 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G66350.1 | 2e-53 | Lateral root primordium (LRP) protein-related |
