PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G289300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SRS
Protein Properties Length: 337aa    MW: 33457 Da    PI: 8.7735
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G289300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702215.11.6e-661112694154
              DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkq.sal 86 
                          ++sCqdCGn+akkdCah+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ + aa+++       a+aaskr+rel  +     +
  Sevir.4G289300.1.p 111 AGTSCQDCGNNAKKDCAHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFRGAANNSasaaaaaAAAASKRPRELVRSLGrLPS 201
                         4579****************************************************99998887777777777788888887333220223 PP

              DUF702  87 sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         +++ ++++++++     ++P+e+s+eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++
  Sevir.4G289300.1.p 202 ANSAMVTTTTSSGDGGGRFPPELSVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 269
                         333344444455667778***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.3E-63112268IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.2E-25114156IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.6E-18219267IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAGFSLRGGG GGGGGRGGER GGDHPIGADS LFLYARGAAA AAADTAASGG GGGGIGFQLW  60
HPHQQAAAAA PHTSQFFSSG VATGVVLGFS SHDGSGGIGG PGSGGAGGGR AGTSCQDCGN  120
NAKKDCAHMR CRTCCRSRGF SCPTHVKSTW VPAAKRRERQ QQLAALFRGA ANNSASAAAA  180
AAAAASKRPR ELVRSLGRLP SANSAMVTTT TSSGDGGGRF PPELSVEAVF RCVRIGPVDE  240
PDAELAYQTA VSIGGHTFKG ILRDHGPADD AAVGQLPPSS EYHQLTGQAR EGSSPAGSSE  300
AAATVATSAA VLMDPYPTPI GAFAAGTQFF PHNPRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1615RGGGGGGGGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G289300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043291e-177AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12.
GenBankAP0054631e-177AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01.
GenBankAP0149621e-177AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700884.11e-165protein SHI RELATED SEQUENCE 1
RefseqXP_022681542.11e-165protein SHI RELATED SEQUENCE 1
TrEMBLA0A2T7DU751e-164A0A2T7DU75_9POAL; Uncharacterized protein
STRINGPavir.J38504.1.p1e-165(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-53Lateral root primordium (LRP) protein-related