PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G282500.6.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 433aa    MW: 46842.2 Da    PI: 9.4811
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G282500.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.4e-41160236278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         CqvegC++dls+ak yhr+hkvCe h+kap+v+v+gle+rfCqqCsrfh l efD++krsCrrrL +hn+rrrk+q+
  Sevir.4G282500.6.p 160 CQVEGCKVDLSSAKAYHRKHKVCEDHAKAPKVVVAGLERRFCQQCSRFHGLAEFDQNKRSCRRRLTHHNARRRKPQT 236
                         **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.2E-33153221IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.146157234IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-38159240IPR004333Transcription factor, SBP-box
PfamPF031105.3E-32160233IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MGSFGMNWDQ KNSMVWDCEN LAPSVPNEIV RHGSANSSGG TLTSSSELGH GSSKSSISGS  60
IDSPFGVGNS IEFNFAAVER HVKDMGKNGR VDDSRTSPSS MIAFSHGEPS ISLKLGKRAY  120
VENVCGRQDN KSSAPSTVTS ASTVVKKTKV SHQNVKNSYC QVEGCKVDLS SAKAYHRKHK  180
VCEDHAKAPK VVVAGLERRF CQQCSRFHGL AEFDQNKRSC RRRLTHHNAR RRKPQTDTIS  240
FNSSRLSTMF YDTSQQTNLF FSQPLFSQVR SNALSSWDNL GGFKFVETKH MSMHPMKTVG  300
LDELPFSNLQ ISTSVAAQTA RHHNFDGLMP VKGTNTKVLN QGVEASTAAS NSNGAPELGR  360
ALSLLSDGSW GSSSTVIQQH NSHVHTGAMP PLGTIAVSNP VTNHLDPSPG GFWHDDPATL  420
DGTLQIQAST HL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-281602331184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00161DAPTransfer from AT1G27360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G282500.6.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966343.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_004966344.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_004966345.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_022681748.10.0squamosa promoter-binding-like protein 12 isoform X1
SwissprotA2YGR51e-165SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLK3XX130.0K3XX13_SETIT; Uncharacterized protein
STRINGSi006471m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27360.43e-37squamosa promoter-like 11