PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G236900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 672aa    MW: 76590.7 Da    PI: 8.3763
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G236900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.67.6e-2283173289
                FAR1   2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         fYn+YA + GF +r+++s++++r+g    ++++fvC keg+++++  + ++k++r+r + r gC a+++v ++  +kw++tkl+l+H+H +
  Sevir.4G236900.1.p  83 FYNAYALRFGFGIRVARSRSERRKGveVLVMKRFVCLKEGHHKKKPVDpSNKKKRKRLSIRDGCPAMMEVVRRGPDKWVITKLVLDHTHVI 173
                         9**************9999886665216789**********99998887899999**********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-2083173IPR004330FAR1 DNA binding domain
PfamPF105512.3E-25261352IPR018289MULE transposase domain
PROSITE profilePS509669.396544576IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-6548574IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MEYSSSEDEE LVEEFIDVED DTGTANIDQR TGVMASQIHG IDPSDGSMAP TGNELLMAAD  60
VVAKNDEPRM GMEFESDAAA RAFYNAYALR FGFGIRVARS RSERRKGVEV LVMKRFVCLK  120
EGHHKKKPVD PSNKKKRKRL SIRDGCPAMM EVVRRGPDKW VITKLVLDHT HVIISADRAR  180
EVQLRRLSGK FQEHENQLQE LRRNVFGDTD AQGLFDYFKR MQSENSGFFC SIQVDSKNCV  240
SNAVWVDARA RMAYTYFGDA VYFDTTYSQN ENMLPFAAFT GVNHHGDTVV FGCALILDRT  300
ESSYAWIFET WLTAMDKRLP FSFTTDEGKG MAAAVAKVFP QCFHRLCRWR ILSRCKKKLT  360
DVYTRFPGFH DELKRCINEC DTVPVFDMFW GSILDKYGLR DDTWLQSLYE IRHKWVPAYL  420
TSSFFAELSL THRVETVSRF HRNNFSARVS LSNFITRFDQ YMDSLYVSEA RKDIISLPPE  480
QLLKTNTVLE KQAASIYTRA AFETFQVELI EALQHFAVKV QDGPYMKYYV ERGGNPPTRH  540
TVFYNVTEKK AWCDCCRFAF SAILCRHVLG VFVMAGVIML PEPCITKRWT KKAKMGPELI  600
GLNVGNESGS ADSVASRYND LVRDAMKCAE KGAVSAGTFR VAKEVLCKAF MEIKALREKL  660
NKDALHSAVS R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124138KKKPVDPSNKKKRKR
2125137KKPVDPSNKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G236900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965969.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_022681463.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A368QX370.0A0A368QX37_SETIT; Uncharacterized protein
STRINGSb10g023270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-124FAR1-related sequence 5