PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G227200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 395aa    MW: 42313.7 Da    PI: 7.537
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G227200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05191210120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  Sevir.4G227200.1.p 191 FSCPVCYKTFNRYNNMQMHM 210
                         89*****************9 PP
2zf-C2H214.10.00014275297123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk F  + + ++H +++
  Sevir.4G227200.1.p 275 FMCRKCGKAFAVRGDWRTHEKNC 297
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.62E-5187213No hitNo description
Gene3DG3DSA:3.30.160.607.0E-6191210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.743191218IPR007087Zinc finger, C2H2
SMARTSM003550.45191213IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-6259295No hitNo description
Gene3DG3DSA:3.30.160.601.7E-6261295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808275295IPR007087Zinc finger, C2H2
SMARTSM0035549275295IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGDPYTNFLR GYYSHFPPPN PPSFSSSYAA ASSYLHPPPP SPPIREALPL LSNLTPSSST  60
TNHHQHDDDD VAARDHKDCK RAASCSGQDA ADQAAGEVTV ALHIGLPSPS PSESAAAGGG  120
ESREPAGGPQ QQQQPGDGGH GGGEDEAAED GDDGEDAAMA VGCASIGIGR LTKGQYWIPT  180
PSQILIGPTQ FSCPVCYKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT AMLRLPCYCC  240
AAGCRNNIDH PRARPLKDFR TLQTHYRRKH GIKPFMCRKC GKAFAVRGDW RTHEKNCGKL  300
WYCACGSDFK HKRSLKDHIR AFGRGHAACG IDCFDDLDDD DRDPSSEVDH ATTNAGTTTS  360
SAAAAGGAAS SKQQHHWKPP PSSSSRGSGG DRLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G227200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389150.0BT038915.1 Zea mays full-length cDNA clone ZM_BFb0339K06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965894.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-127ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLK3XXF80.0K3XXF8_SETIT; Uncharacterized protein
STRINGSi006616m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]