PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 293aa MW: 31036 Da PI: 9.1943

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.4G226300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	3.9e-09	123	170	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq Sevir.4G226300.1.p 123 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 170 8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-15	117	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.60E-9	117	174	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-14	119	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.627	119	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	123	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-8	125	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MELLLPRAAA APPAPAPAPA PAPTFPSDPH LVDRAARFSA FASPSPSSPS PTPPPPPPPA 60 PPAAAAAANA GKRKADQPAD RASKGKSAKK GKTAEEKPAG GDGEDEKPAY VHVRARRGQA 120 TDSHSLAERA RREKINARME LLKELVPGCS KVSGTALVLD EIINHVQSLQ RQVEYLSMRL 180 AAVNPRVDFG GLDSFLTTEC GRIAGLNCKN GIDLEQVTWP EMGVHGARHL MQLQQQFWHG 240 DLAHPHQAPS QWEKRGDGHP PVFSSSSPSL FGYDLTSSGA QQPPASKLKT EL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.4G226300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040729	0.0	BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701081.3	0.0	transcription factor bHLH48
Swissprot	Q8VZ02	4e-56	BH048_ARATH; Transcription factor bHLH48
TrEMBL	K3XXX3	0.0	K3XXX3_SETIT; Uncharacterized protein
STRING	Si006781m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	4e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sevir.4G226300.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]