 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.4G213500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
AP2 |
| Protein Properties |
Length: 457aa MW: 49439.2 Da PI: 8.4669 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.4G213500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 56.5 | 6.7e-18 | 105 | 154 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g
Sevir.4G213500.1.p 105 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 154
78*******************......55************************997 PP
|
| 2 | AP2 | 41.7 | 2.9e-13 | 197 | 247 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+++GV+++k g+W+A+I +k+++lg ++t+ eAa+a+++a+ k +g
Sevir.4G213500.1.p 197 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAQAYDKAAIKCYG 247
789*******.7******77733....25**********77**********99776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 457 aa
Download sequence Send
to blast |
MAATKRSFHG VVVDGIARAV AEEELQVNRR PEEGANRMIF GFPVPGAPTR PAAAVTQQFF 60
PATVAAAAPP AQATELCHVA APSAADQWAR SASRKSRRGP RSRSSQYRGV TFYRRTGRWE 120
SHIWDCGKQV YLGGFDTAQA AARAYDQAAI KFRGVNADIN FTLSDYKDEI KKMKNFSKEE 180
FVQVLRRQGA GFVRGSSRFR GVTQHKCGKW EARIGQLMGK KYVYLGLYDT EMEAAQAYDK 240
AAIKCYGKEA VTNFEPQTYD EELQVQPWDG ELDLELSLGC AGSDPSAAAA AVEVFTTAPS 300
RQRTMTLTLD LPEEDNETGA AADPGRCFRT RRPSPTPGTF RLLLADDDHV CHPGTGSRDD 360
NDTLHMLQMG QVGSSGGGGG AAAAAGAHMR WPNGGNNWAP PYATARAGPD TDDADAAAAA 420
SSGFPLGRCS RCPRRPGGPA TAEQPPVHQH KQQWWR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}. |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
