PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G213500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 457aa    MW: 49439.2 Da    PI: 8.4669
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G213500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-18105154155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Sevir.4G213500.1.p 105 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 154
                         78*******************......55************************997 PP
2AP241.72.9e-13197247155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV+++k  g+W+A+I         +k+++lg ++t+ eAa+a+++a+ k +g
  Sevir.4G213500.1.p 197 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAQAYDKAAIKCYG 247
                         789*******.7******77733....25**********77**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-16105163IPR016177DNA-binding domain
PfamPF008478.9E-10105154IPR001471AP2/ERF domain
PROSITE profilePS5103217.754106162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17106162IPR001471AP2/ERF domain
SMARTSM003801.3E-31106168IPR001471AP2/ERF domain
CDDcd000187.65E-24197257No hitNo description
PfamPF008475.2E-9197247IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-17197255IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-17198255IPR001471AP2/ERF domain
SMARTSM003801.1E-34198261IPR001471AP2/ERF domain
PROSITE profilePS5103215.843198255IPR001471AP2/ERF domain
PRINTSPR003674.2E-6199210IPR001471AP2/ERF domain
PRINTSPR003674.2E-6237257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAATKRSFHG VVVDGIARAV AEEELQVNRR PEEGANRMIF GFPVPGAPTR PAAAVTQQFF  60
PATVAAAAPP AQATELCHVA APSAADQWAR SASRKSRRGP RSRSSQYRGV TFYRRTGRWE  120
SHIWDCGKQV YLGGFDTAQA AARAYDQAAI KFRGVNADIN FTLSDYKDEI KKMKNFSKEE  180
FVQVLRRQGA GFVRGSSRFR GVTQHKCGKW EARIGQLMGK KYVYLGLYDT EMEAAQAYDK  240
AAIKCYGKEA VTNFEPQTYD EELQVQPWDG ELDLELSLGC AGSDPSAAAA AVEVFTTAPS  300
RQRTMTLTLD LPEEDNETGA AADPGRCFRT RRPSPTPGTF RLLLADDDHV CHPGTGSRDD  360
NDTLHMLQMG QVGSSGGGGG AAAAAGAHMR WPNGGNNWAP PYATARAGPD TDDADAAAAA  420
SSGFPLGRCS RCPRRPGGPA TAEQPPVHQH KQQWWR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G213500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU414660.0U41466.1 Zea mays Glossy15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965778.10.0uncharacterized protein LOC101769206 isoform X2
SwissprotA0A0N7KMH01e-148AP24_ORYSJ; APETALA2-like protein 4
SwissprotB8B0I81e-149AP24_ORYSI; APETALA2-like protein 4
TrEMBLA0A368QWA00.0A0A368QWA0_SETIT; Uncharacterized protein
STRINGSi006371m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.26e-84AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]