PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G213500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 457aa MW: 49439.2 Da PI: 8.4669 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.7e-18 | 105 | 154 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g Sevir.4G213500.1.p 105 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 154 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.7 | 2.9e-13 | 197 | 247 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+++k g+W+A+I +k+++lg ++t+ eAa+a+++a+ k +g Sevir.4G213500.1.p 197 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAQAYDKAAIKCYG 247 789*******.7******77733....25**********77**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.54E-16 | 105 | 163 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.9E-10 | 105 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.754 | 106 | 162 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-17 | 106 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-31 | 106 | 168 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.65E-24 | 197 | 257 | No hit | No description |
Pfam | PF00847 | 5.2E-9 | 197 | 247 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-17 | 197 | 255 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-17 | 198 | 255 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-34 | 198 | 261 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.843 | 198 | 255 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-6 | 199 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-6 | 237 | 257 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MAATKRSFHG VVVDGIARAV AEEELQVNRR PEEGANRMIF GFPVPGAPTR PAAAVTQQFF 60 PATVAAAAPP AQATELCHVA APSAADQWAR SASRKSRRGP RSRSSQYRGV TFYRRTGRWE 120 SHIWDCGKQV YLGGFDTAQA AARAYDQAAI KFRGVNADIN FTLSDYKDEI KKMKNFSKEE 180 FVQVLRRQGA GFVRGSSRFR GVTQHKCGKW EARIGQLMGK KYVYLGLYDT EMEAAQAYDK 240 AAIKCYGKEA VTNFEPQTYD EELQVQPWDG ELDLELSLGC AGSDPSAAAA AVEVFTTAPS 300 RQRTMTLTLD LPEEDNETGA AADPGRCFRT RRPSPTPGTF RLLLADDDHV CHPGTGSRDD 360 NDTLHMLQMG QVGSSGGGGG AAAAAGAHMR WPNGGNNWAP PYATARAGPD TDDADAAAAA 420 SSGFPLGRCS RCPRRPGGPA TAEQPPVHQH KQQWWR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G213500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ZMU41466 | 0.0 | U41466.1 Zea mays Glossy15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965778.1 | 0.0 | uncharacterized protein LOC101769206 isoform X2 | ||||
Swissprot | A0A0N7KMH0 | 1e-148 | AP24_ORYSJ; APETALA2-like protein 4 | ||||
Swissprot | B8B0I8 | 1e-149 | AP24_ORYSI; APETALA2-like protein 4 | ||||
TrEMBL | A0A368QWA0 | 0.0 | A0A368QWA0_SETIT; Uncharacterized protein | ||||
STRING | Si006371m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11821 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 6e-84 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G213500.1.p |
Publications ? help Back to Top | |||
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