PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G208100.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 306aa    MW: 33304.5 Da    PI: 6.3535
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G208100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-072542872154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++L +++gL+ +q+ +WF N+R +
  Sevir.4G208100.2.p 254 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 287
                         569*****************************87 PP
2ELK30.86.7e-11208229122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++L+++++E++
  Sevir.4G208100.2.p 208 ELKHELKQGYREKLVDIREEIM 229
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194589IPR005540KNOX1
PfamPF037901.4E-164885IPR005540KNOX1
SMARTSM012561.5E-2597152IPR005541KNOX2
PfamPF037919.6E-17105151IPR005541KNOX2
SMARTSM011883.8E-4208229IPR005539ELK domain
PfamPF037899.6E-7208229IPR005539ELK domain
PROSITE profilePS5121310.196208228IPR005539ELK domain
PROSITE profilePS5007111.758228291IPR001356Homeobox domain
SMARTSM003893.3E-10230295IPR001356Homeobox domain
SuperFamilySSF466896.84E-16230294IPR009057Homeodomain-like
CDDcd000863.76E-11231292No hitNo description
Gene3DG3DSA:1.10.10.602.3E-24235292IPR009057Homeodomain-like
PfamPF059203.2E-18248287IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAFHYPDHAL AMDPAAAAAA AGVGAAVNPS FVPGGGGVGG PGGWEREKAA IAAHPLYERL  60
LEAHVACLRV ATPVDQLPRI DAQIAARPPP MAAAAAAGGA QSGGEELDLF MTHYVLLLCS  120
FKEQLQQHVR VHAMEAVMAC WELEQTLQSL TGASPGEGTG ATMSDDEDNQ VDSESNMFDG  180
NEGSDGMGFG PLMLTEGERS LVERVRQELK HELKQGYREK LVDIREEIMR KRRAGKLPGD  240
TASTLKAWWQ AHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH SNPASSSSDK  300
SKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284304RKRNWHSNPASSSSDKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G208100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0998780.0FP099878.1 Phyllostachys edulis cDNA clone: bphylf032a14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965737.10.0homeobox protein knotted-1-like 11 isoform X1
RefseqXP_004965738.10.0homeobox protein knotted-1-like 11 isoform X2
SwissprotQ0E3C31e-178KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLK3XYC40.0K3XYC4_SETIT; Uncharacterized protein
TrEMBLK3XYF60.0K3XYF6_SETIT; Uncharacterized protein
STRINGSi006932m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-140KNOTTED1-like homeobox gene 3