PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G207300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 383aa    MW: 41648.1 Da    PI: 9.5686
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G207300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like41.43.3e-13841132655
             G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +A+Pk++le+m+v+gLt++ ++SHLQkYR+
  Sevir.4G207300.1.p  84 EAVPKKLLEVMNVDGLTRDCIASHLQKYRI 113
                         79***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011010.579135IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23004.0E-5453No hitNo description
SuperFamilySSF466892.15E-775117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-1283118IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-1184113IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MRREFMVKGV KYRACDYLLK PTRLEQFRNV WMHVLQSGHG ENSEKDGANH TRKHSKKNKK  60
DGNGAKGDKD GMSTQKKQRI QWSEAVPKKL LEVMNVDGLT RDCIASHLQK YRIYLKQLND  120
GTFKHSNPFM EELQMLEANR GIPFDADNFF EEIAKGEMSA PSSHLPLQSP EFANQPSVHT  180
QSSSAGQFNQ VAPSDHLPLQ SPELVNQPSI QIPPSSVGLF NPVAREPHQL AGLLNSSSSW  240
RNGVPPRFPD IGHIAGTFIG PTHTNSIMIN QISGLVASSS RVPTFMNEYQ NQMAGLMGTS  300
APMVGLSEQV AETQFNSGSS ASSTVVPIGN STLGSSSSIR PTFSSLQIGN PVMPTQMPNG  360
GSATGNLREG GTPLISNLLV IK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G207300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305586.11e-109two-component response regulator ORR24
TrEMBLA0A368QXY51e-153A0A368QXY5_SETIT; Uncharacterized protein
STRINGSb10g025500.11e-109(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4162723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.14e-23response regulator 10