PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G201000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 466aa MW: 50181.3 Da PI: 6.1407 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.3 | 2.6e-15 | 128 | 187 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Sevir.4G201000.1.p 128 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 187 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 47.4 | 4.7e-15 | 230 | 281 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Sevir.4G201000.1.p 230 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 281 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-17 | 128 | 197 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.75E-21 | 128 | 197 | No hit | No description |
Pfam | PF00847 | 2.5E-12 | 128 | 187 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.23 | 129 | 195 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-30 | 129 | 201 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-16 | 129 | 196 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 130 | 141 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.17E-23 | 230 | 291 | No hit | No description |
SuperFamily | SSF54171 | 6.15E-18 | 230 | 291 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.8E-10 | 230 | 281 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 231 | 289 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 231 | 295 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-18 | 231 | 290 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 271 | 291 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MDMDMSSAYP HHWLSFSLSN NYHHGLLEAF SNSSSAPPPL GEEGAVEESP KIEDFLGGGG 60 GMGAPPATAA EDQLVCGELG SIAAGFLRQY PTPGAVENPG AVTVAMSTEV AESDQARRPV 120 ETFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQVYLGGYDK EEKAARAYDL 180 AALKYWGPTT TTNFPVSNYE KELEEMKSMT RQEFIASLRR KSSGFSRGAS IYRGVTRHHQ 240 HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVESILN 300 SDLPIGGGAA GRASKFPLDS LPPASAAAMI TGAVSQAMPP SEKDYWSLLA LHYQQQQQQQ 360 QFPASAYEAY GSSGVNVDFT MGTSSHSGSN TSSGVMWGAT VGAMGQQDSS SNKQGNTYGS 420 NIPYAAAAMV SGSAGYEGST GNNGTWVTSN TSAAPQYYNY LFGME* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G201000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040003 | 0.0 | BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965682.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-132 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | K3Y2A3 | 0.0 | K3Y2A3_SETIT; Uncharacterized protein | ||||
STRING | Si008325m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-126 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G201000.1.p |
Publications ? help Back to Top | |||
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