PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

AP2

Protein Properties

Length: 466aa MW: 50181.3 Da PI: 6.1407

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.4G201000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.3	2.6e-15	128	187	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Sevir.4G201000.1.p 128 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 187 57*****************666664477446***********************98 PP
2	AP2	47.4	4.7e-15	230	281	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Sevir.4G201000.1.p 230 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 281 57**************988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.11E-17	128	197	IPR016177	DNA-binding domain
CDD	cd00018	6.75E-21	128	197	No hit	No description
Pfam	PF00847	2.5E-12	128	187	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.23	129	195	IPR001471	AP2/ERF domain
SMART	SM00380	4.6E-30	129	201	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.2E-16	129	196	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-6	130	141	IPR001471	AP2/ERF domain
CDD	cd00018	3.17E-23	230	291	No hit	No description
SuperFamily	SSF54171	6.15E-18	230	291	IPR016177	DNA-binding domain
Pfam	PF00847	5.8E-10	230	281	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.045	231	289	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-33	231	295	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.9E-18	231	290	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-6	271	291	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MDMDMSSAYP HHWLSFSLSN NYHHGLLEAF SNSSSAPPPL GEEGAVEESP KIEDFLGGGG 60 GMGAPPATAA EDQLVCGELG SIAAGFLRQY PTPGAVENPG AVTVAMSTEV AESDQARRPV 120 ETFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQVYLGGYDK EEKAARAYDL 180 AALKYWGPTT TTNFPVSNYE KELEEMKSMT RQEFIASLRR KSSGFSRGAS IYRGVTRHHQ 240 HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVESILN 300 SDLPIGGGAA GRASKFPLDS LPPASAAAMI TGAVSQAMPP SEKDYWSLLA LHYQQQQQQQ 360 QFPASAYEAY GSSGVNVDFT MGTSSHSGSN TSSGVMWGAT VGAMGQQDSS SNKQGNTYGS 420 NIPYAAAAMV SGSAGYEGST GNNGTWVTSN TSAAPQYYNY LFGME*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MDMDMSSAYP HHWLSFSLSN NYHHGLLEAF SNSSSAPPPL GEEGAVEESP KIEDFLGGGG  60
GMGAPPATAA EDQLVCGELG SIAAGFLRQY PTPGAVENPG AVTVAMSTEV AESDQARRPV  120
ETFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQVYLGGYDK EEKAARAYDL  180
AALKYWGPTT TTNFPVSNYE KELEEMKSMT RQEFIASLRR KSSGFSRGAS IYRGVTRHHQ  240
HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVESILN  300
SDLPIGGGAA GRASKFPLDS LPPASAAAMI TGAVSQAMPP SEKDYWSLLA LHYQQQQQQQ  360
QFPASAYEAY GSSGVNVDFT MGTSSHSGSN TSSGVMWGAT VGAMGQQDSS SNKQGNTYGS  420
NIPYAAAAMV SGSAGYEGST GNNGTWVTSN TSAAPQYYNY LFGME*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269\|PubMed:15988559}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.4G201000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040003	0.0	BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965682.1	0.0	AP2-like ethylene-responsive transcription factor AIL5
Swissprot	Q6PQQ3	1e-132	AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBL	K3Y2A3	0.0	K3Y2A3_SETIT; Uncharacterized protein
STRING	Si008325m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP797	38	151

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-126	AINTEGUMENTA-like 5

Link Out ? help Back to Top
Phytozome	Sevir.4G201000.1.p

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Molitor AM,Bu Z,Yu Y,Shen WH Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes. PLoS Genet., 2014. 10(1): p. e1004091 [PMID:24465219] Feng J,Chen D,Berr A,Shen WH ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development. Plant Physiol., 2016. 172(3): p. 1746-1759 [PMID:27630184] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]