 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.4G192000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NF-YB |
| Protein Properties |
Length: 198aa MW: 21157.9 Da PI: 6.0169 |
| Description |
NF-YB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.4G192000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YB | 112.3 | 2.6e-35 | 26 | 117 | 5 | 96 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
++ +P a v+rim+k+ P n+ki+ dake v++c ++f +fvt+ a++ c+r+kr t++gddl+ a+ +lGf++yv pl++yl++yre+eg
Sevir.4G192000.1.p 26 EHKIPRATVARIMRKATPPNSKIGADAKEAVDQCLVKFAAFVTQVAAEECRRDKRTTVTGDDLILAFKNLGFDNYVGPLTLYLRRYREIEG 116
6789**************************************************************************************9 PP
NF-YB 96 e 96
+
Sevir.4G192000.1.p 117 N 117
7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MDNQPKNHQD GDPFFLTHAA TEAPEEHKIP RATVARIMRK ATPPNSKIGA DAKEAVDQCL 60
VKFAAFVTQV AAEECRRDKR TTVTGDDLIL AFKNLGFDNY VGPLTLYLRR YREIEGNMPR 120
ARHSTMRSQG APPAPVALTV EAAAAPSSGL TLQLGPPSVP DVTELGLHAD VYVVWRGAGP 180
APAAGTSQAP SCADEEE*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4awl_B | 9e-27 | 29 | 113 | 10 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| 4csr_A | 9e-27 | 29 | 113 | 10 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| Search in ModeBase |
