 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sevir.4G137300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NAC |
| Protein Properties |
Length: 345aa MW: 38732.1 Da PI: 6.9626 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.4G137300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.6 | 2.1e-52 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+
Sevir.4G137300.1.p 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGR 99
69****************************.9***************943444442456******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
dk+++ + + +gl+ktLvfy grap+g+ktdW+mheyrl
Sevir.4G137300.1.p 100 DKAIFLGNARRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 139
******999*****************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0003002 | Biological Process | regionalization |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0010455 | Biological Process | positive regulation of cell fate commitment |
| GO:0048829 | Biological Process | root cap development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MHPSGGPLSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR 60
IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNARR IGLRKTLVFY 120
IGRAPHGKKT DWIMHEYRLD EENVEIQEDG WVVCRVFKKK NYQRGLNPAD MAALDDDELQ 180
PFPVPVPAAM PTDHKHNPHL MQYEFPSFDP TMQLPQLMNA DQPVPTVLPS QPGVPIAMSS 240
LDVDCSQNLM KLTSNGSDGM LHGGAGGVDR FTGTTDWSIL DKLLASHQNL DQLFQGKVST 300
ASAPPMAPYH QQLMELGGSS SSSLQRLPLH YLGGEAADLL RFPK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 3e-51 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 3e-51 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ833965 | 0.0 | AJ833965.1 Zea mays partial mRNA for hypothetical protein (nac6 gene). |
