PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G085500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRF
Protein Properties Length: 324aa    MW: 34481.4 Da    PI: 9.2315
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G085500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.26.7e-2489132144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRCsr++ + +k+CE+H+hrg+srsrk++e
  Sevir.4G085500.1.p  89 DPEPGRCRRTDGKKWRCSREAHGESKYCEKHIHRGKSRSRKPVE 132
                         79***************************************998 PP
2QLQ613.3e-211650236
                 QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         FTa+Q+q+L++Q+l+yKy+a+++PvP++L+++++
  Sevir.4G085500.1.p 16 LFTASQWQELEHQALIYKYMASGAPVPHDLVLPLR 50
                        5*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-91551IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.1431651IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-151749IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.09789133IPR014977WRC domain
PfamPF088795.0E-1990132IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMLSGHGGGG GGGRRLFTAS QWQELEHQAL IYKYMASGAP VPHDLVLPLR LATGVDTAPS  60
LAFPPQTSPT LGYWGCYGAG APFGRKAEDP EPGRCRRTDG KKWRCSREAH GESKYCEKHI  120
HRGKSRSRKP VEAVASAAAT SPAAGAYRPS ALSISPPRAP DAAPTTFGHQ QQHHLHYGAS  180
SGRAPAGPLQ LHLDAASLHA ASPPPSYHRY SHAHAHAHYA TPPSLFPGSY SHGQSKELQD  240
AELRRRHYLA LGADLSLDKP PAAAAATEEK PLRRFFDEWP REGGDARPWA MGAEDATQLS  300
ISIPAASPSD LAAAAAARYH NGE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G085500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400711e-159BT040071.1 Zea mays full-length cDNA clone ZM_BFc0063G19 mRNA, complete cds.
GenBankBT0415401e-159BT041540.1 Zea mays full-length cDNA clone ZM_BFc0173L15 mRNA, complete cds.
GenBankBT0553901e-159BT055390.1 Zea mays full-length cDNA clone ZM_BFb0108H20 mRNA, complete cds.
GenBankEF5158501e-159EF515850.1 Zea mays putative growth-regulating factor 11 (GRF11) mRNA, complete cds.
GenBankJX4699851e-159JX469985.1 Zea mays subsp. mays clone UT3345 GRF-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964939.10.0growth-regulating factor 2
SwissprotQ6AWY79e-95GRF2_ORYSJ; Growth-regulating factor 2
TrEMBLA0A368QSF00.0A0A368QSF0_SETIT; Uncharacterized protein
STRINGSi006922m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139922527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-40growth-regulating factor 5