 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.4G028100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 293aa MW: 30525.2 Da PI: 9.1767 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.4G028100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.9 | 2e-19 | 115 | 169 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee+F+ +++++ +++ LA++lgL rqV vWFqNrRa+ k
Sevir.4G028100.1.p 115 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 169
678899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 125 | 3.6e-40 | 115 | 205 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke ++Lr +l
Sevir.4G028100.1.p 115 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR-AL 204
69*************************************************************************************9.55 PP
HD-ZIP_I/II 92 k 92
k
Sevir.4G028100.1.p 205 K 205
5 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MIPQTASLDL GLSLGLGLTS QGSLSSSITT AGSSPWAAAL SSVVAAQPHQ PHHAAAAAAV 60
DPDSGAMRAS TSPDSAAALS SGTSGGGDNK RELERTGSGG VRSDEEDGAD GAGGRKKLRL 120
SKDQAAVLEE CFKTHSTLNP KQKVALANRL GLRPRQVEVW FQNRRARTKL KQTEVDCEYL 180
KRWCERLADE NKRLEKELAD LRALKAAPST AAQPASSPAA TLTMCPSCRR VAANHQQQCH 240
PKSNASPAPA AATAVAGSVV PSHCQFFPAA VDRTGQSTWN AAAAPLVTRE LF*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 163 | 171 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP093288 | 1e-141 | FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence. |
