 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.4G027900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 272aa MW: 28195.9 Da PI: 9.6366 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.4G027900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.9 | 9.3e-20 | 88 | 142 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee+F+++++++ +++ LA++lgL rqV vWFqNrRa+ k
Sevir.4G027900.1.p 88 RKKLRLSKDQAAVLEECFKMHHTLTPKQKVALASSLGLRPRQVEVWFQNRRARTK 142
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 126.3 | 1.3e-40 | 88 | 177 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL kev+eLr +l
Sevir.4G027900.1.p 88 RKKLRLSKDQAAVLEECFKMHHTLTPKQKVALASSLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCEQLAEENRRLAKEVAELR-AL 177
69*************************************************************************************9.44 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MAPQSLDLGL SLGLGLAALQ PSFCYSGNAA VAAAAEREAS PAAAEERERR CSPAGSPVSS 60
GSGSGKRAAA ERSAGAGSGD EDDDGAARKK LRLSKDQAAV LEECFKMHHT LTPKQKVALA 120
SSLGLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRWCEQL AEENRRLAKE VAELRALNAA 180
AAAPAPAPPL TTLTMCLSCR RVASSSSNPT NVPAAHPHAH IGTANAAVAS PAAPATTLPG 240
HRQFFCGFRD AGAAAYGTSS GLAAKAVKAA R*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 136 | 144 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU968120 | 0.0 | EU968120.1 Zea mays clone 314746 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds. |
