 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.4G021400.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NAC |
| Protein Properties |
Length: 409aa MW: 43506.5 Da PI: 7.2514 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.4G021400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.9 | 1.7e-52 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+
Sevir.4G021400.1.p 11 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGR 100
69****************************.9***************952444443456******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
dk++++ + + +g++ktLvfykgrap+g+k+dW+mheyrl
Sevir.4G021400.1.p 101 DKAIYT-SARRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
******.8899***************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009809 | Biological Process | lignin biosynthetic process |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0009901 | Biological Process | anther dehiscence |
| GO:0010047 | Biological Process | fruit dehiscence |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQEKC 60
RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYTSARR IGMRKTLVFY 120
KGRAPHGQKS DWIMHEYRLD EAHNPSAAAA AAAAGDPYYS SPSPAAIRGA AGDQAAAQEQ 180
EGWVICRVFK KKNLLHHGQS SGGGATASVT GHTGAASSKM AAPMEGSPSN CSSVTVSDHA 240
KAQLLHSASD DALDHILQYI GGRPCGSNTK HHDTKPALLD HHHHHHLATT TTATACTGGG 300
LYGKFMKLPP LEHAGGLLQS PPGDYGGAAD ASGIADWDAL DRLAAYELNG LSDASKTMVS 360
FFDEPGSAAA AAFSSSVHAT TVGVGDGDLW SLARSVSSLH ADLTMDNV*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-46 | 8 | 193 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-46 | 8 | 193 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-46 | 8 | 193 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-46 | 8 | 193 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 2e-46 | 8 | 193 | 14 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 2e-46 | 8 | 193 | 14 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KT075080 | 0.0 | KT075080.1 Panicum virgatum secondary wall NAC master switch (SWN1) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Gondolf VM, et al.
A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
BMC Plant Biol., 2014. 14: p. 344
[PMID:25492673] - Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
GM Crops Food, 2014. 5(4): p. 302-20
[PMID:25523176] - Yuan Y,Teng Q,Zhong R,Ye ZH
TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
Plant Cell Physiol., 2016. 57(1): p. 35-45
[PMID:26556650] - Yang C, et al.
Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
Plant Physiol., 2017. 175(1): p. 333-350
[PMID:28724622] - Pascual MB, et al.
PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
[PMID:29055073] - Liu C,Yu H,Li L
SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
PLoS Genet., 2019. 15(1): p. e1007928
[PMID:30657769]
|
