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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sevir.4G017000.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
GRAS |
| Protein Properties |
Length: 612aa MW: 64880.6 Da PI: 6.4724 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.4G017000.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 386.4 | 3.3e-118 | 216 | 585 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPi 90
v +L++cA+ ++++++++a+ +Larl e+asp+g +pm+R+aayf+eALa r++r++++l++ pp+e ++ ++ ++al++++ v+Pi
Sevir.4G017000.1.p 216 VVALTACADSLAARNHNAASYYLARLGEMASPAGpTPMHRVAAYFAEALALRVVRTWPHLFDVTPPRELTDGAaGDDDATALRILNAVTPI 306
5689***************************************************************9998777999************** PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
++f h+t N+ +l+a++g++rvHiiDfdi+qGlQWp Llq+La R+ +p+++RiTgvg+ s++el+etg rL ++A++lg+ fef++
Sevir.4G017000.1.p 307 PRFLHFTLNERMLRAFDGHDRVHIIDFDIKQGLQWPGLLQSLAMRAVPPAHVRITGVGE----SRQELQETGARLGRVAATLGLAFEFHA- 392
***********************************************************....9**************************. PP
GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl. 271
v++rled++l++L+vk+gE++aVn+vl+ hrll++++ + ++L l +s+ + ++ + e+e +ns+++ +rf++al+yy+a fd++
Sevir.4G017000.1.p 393 VVDRLEDVRLWMLHVKRGECVAVNCVLAAHRLLRDDTGAAL--ADFLGLARSTGAAILLLGEHEDALNSGRWEARFARALRYYAAAFDAVd 481
7********************************87777666..89*********************************************9 PP
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvl 360
+a+l+ +s +r k E++ ++rei+n+va e a+r+erhe+++ W++r+ee GF+++ +++++a+q +++ r+++ y+v+ + + l+l
Sevir.4G017000.1.p 482 AAGLSDASPARLKAEEM-FAREIRNAVAFEAADRFERHESFAGWQQRMEEGGFQNAGIGDREAMQGRMIARMFAPGNYSVQAQgdGEGLTL 571
999**************.********************************************************555*999554367788* PP
GRAS 361 gWkdrpLvsvSaWr 374
W d+p+++vSaW+
Sevir.4G017000.1.p 572 QWLDQPMYTVSAWT 585
*************6 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 612 aa
Download sequence Send
to blast |
MLAGCSFSSS RHQMSTAQRF DILPYGFSKR SNRGDGGGGG APRVAAGDAR TGGAATCSFR 60
AHPAPPVTQA VSWGAKPEPG GNGAGGVWER SRAVKRAHEE YGGPVVRAKR TRMGGDGDEV 120
WFHQPIAGTV QAAGGGEGEQ PEEEKAFLVP SAAAFPHAGT SLAAAKEEEF SKSPSNSPAS 180
SGGTDGGSSA VPRPELHARN GVPAPEEAGR EAMELVVALT ACADSLAARN HNAASYYLAR 240
LGEMASPAGP TPMHRVAAYF AEALALRVVR TWPHLFDVTP PRELTDGAAG DDDATALRIL 300
NAVTPIPRFL HFTLNERMLR AFDGHDRVHI IDFDIKQGLQ WPGLLQSLAM RAVPPAHVRI 360
TGVGESRQEL QETGARLGRV AATLGLAFEF HAVVDRLEDV RLWMLHVKRG ECVAVNCVLA 420
AHRLLRDDTG AALADFLGLA RSTGAAILLL GEHEDALNSG RWEARFARAL RYYAAAFDAV 480
DAAGLSDASP ARLKAEEMFA REIRNAVAFE AADRFERHES FAGWQQRMEE GGFQNAGIGD 540
REAMQGRMIA RMFAPGNYSV QAQGDGEGLT LQWLDQPMYT VSAWTPMGDG GGGGSTVSAS 600
VSTTASHSQQ S*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP001168 | 0.0 | AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02. |
| GenBank | AP002838 | 0.0 | AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22. |
| GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
| Publications
? help Back to Top |
- Tong H,Chu C
Roles of DLT in fine modulation on brassinosteroid response in rice.
Plant Signal Behav, 2009. 4(5): p. 438-9
[PMID:19816111] - Li W, et al.
Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
Planta, 2010. 232(6): p. 1383-96
[PMID:20830595] - Tong H, et al.
DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
Plant Cell, 2012. 24(6): p. 2562-77
[PMID:22685166] - Zhang C,Bai MY,Chong K
Brassinosteroid-mediated regulation of agronomic traits in rice.
Plant Cell Rep., 2014. 33(5): p. 683-96
[PMID:24667992] - Yang C,Shen W,He Y,Tian Z,Li J
OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
PLoS Genet., 2016. 12(6): p. e1006118
[PMID:27332964]
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