PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G010100.5.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 476aa    MW: 49772.7 Da    PI: 4.3976
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G010100.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.7e-13300343755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         e+Er+RR+++N+a+ +Lr+l+P+      +K++ a+iL  A++YI  Lq
  Sevir.4G010100.5.p 300 EAERKRRKKLNDALYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 343
                         89*********************7.....7***************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-17291354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-14291347No hitNo description
PROSITE profilePS5088816.005293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-11300343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15300354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MGGGDHRCMA ATAATAASAG YGGGSVEAAL RPLVGAHAWD YCICWRLSPD QRFLEMTGLC  60
CSSELEAQVS ALGELPSSIP LDSSSAGMHA EAMMSNQPIW QTSCVPAELP ASCSTDLGSA  120
AGPRTRLLVP IAGGLVELFA ARYMVEDEQM AELVREQCGV PARATEGEGD EGGAAVHMWP  180
EAPGFAWDGA DPQRMYGAVP PSLSQFDAAG DPFLAAPPPG VVDDAAAGWQ YATAAGSEPS  240
VVAAQQEQHG VARAGGTDSG SEGSDLQGDP EDDGDGDAQG RGGGGGGKGG SKRQQCKNLE  300
AERKRRKKLN DALYKLRSLV PNITKMDRAS ILGDAIDYIV GLQNQVKALQ DELEDPADGA  360
PDVLLDHLPP ASLVGLENDD SPRASLQQPP ASKRARAAAA APAEEEKGHD MEPQVEVRQV  420
EANGFFLQVL CEHKPGRFVR LMDAVNALGL DITNVNVTSY KTLVLNVLRV VVRIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301308ERKRRKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G010100.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964331.10.0transcription factor TDR-like
RefseqXP_004964332.10.0transcription factor TDR-like
RefseqXP_022681697.10.0transcription factor TDR-like
SwissprotQ6YUS31e-163TDR_ORYSJ; Transcription factor TDR
TrEMBLA0A368QPG30.0A0A368QPG3_SETIT; Uncharacterized protein
STRINGSi006199m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.16e-38bHLH family protein
Publications ? help Back to Top
  1. Endo M, et al.
    High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development.
    Plant Cell Physiol., 2009. 50(11): p. 1911-22
    [PMID:19808807]
  2. Xu J,Wu M,He C
    [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae].
    Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61
    [PMID:20387456]
  3. Liu Z,Bao W,Liang W,Yin J,Zhang D
    Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development.
    J Integr Plant Biol, 2010. 52(7): p. 670-8
    [PMID:20590996]
  4. Zhang D, et al.
    OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice.
    Plant Physiol., 2010. 154(1): p. 149-62
    [PMID:20610705]
  5. Senapati PK,Behera S
    Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock.
    Bioresour. Technol., 2012. 117: p. 99-106
    [PMID:22613886]
  6. Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH
    [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content].
    Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7
    [PMID:23285852]
  7. Li L, et al.
    An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.
    Planta, 2015. 241(1): p. 157-66
    [PMID:25236969]
  8. Yi J, et al.
    Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.
    Plant Physiol., 2016. 170(3): p. 1611-23
    [PMID:26697896]