PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 324aa MW: 35278.7 Da PI: 7.2093

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.4G004600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.3	7.4e-13	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +++g +t q++s+ qky Sevir.4G004600.1.p 70 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 114 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.14E-16	64	120	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.628	65	119	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.1E-18	68	117	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.6E-6	69	110	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-10	69	117	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-10	70	114	IPR001005	SANT/Myb domain
CDD	cd00167	7.83E-8	72	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MVSMSTTPHP LDSSVPGVGG GGGGGGGEGK EAARRVRLVQ AAAPTAVPLG DEDDEGPRRV 60 RKPYTITKSR ESWTEPEHDK FLEALQLFDR DWKKIEAYVG SKTVIQIRSH AQKYFLKVQK 120 NGTGEHLPPP RPKRKAAHPY PHKASKKALQ VVLPQQASHI MEQGCGTSMD TATVATDLSA 180 NDAFLSWEND PVQQFSPRHT QGSGATNNCS SSMGSQSGTW PTSEATEQAV MLPALRAMPD 240 FARVYSFLGS IFDPETNGHL QKLKEMDPID AETVLLLMKN LSINLTSPNF EEHRRLLASH 300 DSSMDQDVGS SHTVHLPFMI TSK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.4G004600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964289.1	0.0	protein REVEILLE 6 isoform X1
Swissprot	Q8H0W3	4e-95	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	K3XYA0	0.0	K3XYA0_SETIT; Uncharacterized protein
STRING	Si006883m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1096	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	2e-81	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Sevir.4G004600.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]