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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sevir.4G003500.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NAC |
| Protein Properties |
Length: 340aa MW: 39398.1 Da PI: 6.9959 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.4G003500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 177.7 | 3.1e-55 | 14 | 148 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85
+ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL+ k ++e++ewyfFs++dkky+tg+r+nrat++g+Wka
Sevir.4G003500.1.p 14 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQdKcrlggPGEEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKA 103
69****************************.99**************944655542334677***************************** PP
NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
tg+dk+++++ +++lvg++ktLv+ykgrap+g+k+dW+mheyrle
Sevir.4G003500.1.p 104 TGRDKPIYANkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 148
********9856777****************************85 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MGMSSTQAQT QQLVPPGFRF HPTDEELVDY YLRKKVASRR IDLNVIKDVD LYKIEPWDLQ 60
DKCRLGGPGE EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKPI YANKQRQLVG 120
MRKTLVYYKG RAPNGHKSDW IMHEYRLETN ENGPPQEEGW VVCRVFKKRL PTTRRESDHD 180
APCWYVDEDG PFMHDLNSPM SRMPPHHSMA QLQEQHLQML NNTYKRELKL QFHMPSHHVL 240
STIPHELESP SFHSLLVSPD HQTNVHHAHQ HVQLMEHAVD QVTDWRVLDK FVASQLSHDA 300
TKGVDYTGEG DIIQVNEKQE VATDYASTST SSSQVDPWK*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 4e-53 | 1 | 169 | 7 | 169 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT075091 | 0.0 | KT075091.1 Panicum virgatum secondary wall NAC master switch (SWN7B) mRNA, complete cds. |
