PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G422900.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 648aa    MW: 71973.2 Da    PI: 5.9988
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G422900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-094064431954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  Sevir.3G422900.2.p 406 FEHflHPYPKDSEKMMLARQTGLTRSQISNWFINARVR 443
                         665559******************************88 PP
2BELL119.61.4e-38269340172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e+qelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  Sevir.3G422900.2.p 269 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQSVVSSFDVVAGPGAAKPYTAVALQTISRHFRCLKDAINDQI 340
                         689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-57195338IPR006563POX domain
PfamPF075268.1E-52201336IPR006563POX domain
PROSITE profilePS5007112.39384447IPR001356Homeobox domain
SMARTSM003893.6E-9387451IPR001356Homeobox domain
CDDcd000862.22E-12387448No hitNo description
SuperFamilySSF466891.97E-17388454IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-28390453IPR009057Homeodomain-like
PfamPF059206.1E-18404443IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MMATYYSSPG SERDSQNMYS RDPGNASYPM PSALGNLLYL NNSTSGPYTE FSGILHPQQN  60
CMEMPDPGHP SVMSQDSSAR ESDMLGSHQG QRSFGPVKDM KNEMLMHMMD GSQSSTADLI  120
HDDAHNGAQL DFGVLNNHSS SNIPSVQGQG LSLSLNTQIL APSLPYWSVK PDMLSPHSYH  180
DSLRVDDIRM KSMQSEASRA IRNSRYLKAA QELLDEVVNV WKNIKQKAQK EQVEAGKTDG  240
KETEGGAKSE GSNPQESAAN AAPELSTAEK QELQNKMAKL MAMLDEVDRK YKHYYHQMQS  300
VVSSFDVVAG PGAAKPYTAV ALQTISRHFR CLKDAINDQI NVIRKKLGEE ENSSGKEGKL  360
TRLRYIDQQL RQQRAFQQYG MIPQNAWRPQ RGLPENSVTI LRAWLFEHFL HPYPKDSEKM  420
MLARQTGLTR SQISNWFINA RVRLWKPMIE DMYKDEIGDI EQDSNSSSDN APRSKGKMAS  480
SEDKEDLKSS TPRVCESSQL SESRASIGTM NIGGAPVGFQ NEPNPDDSFM NLMLKDQRSN  540
EADGGLLLHN AVAHHQDENA RFMAYHLAEL GRYGNGNVSL TLGLQHSSSS LSVPNAQQSF  600
PGVGDDDIYN ATAPLGVSVA SSDYESMNQM DQRQRFEQSP LLHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16393450158Homeobox protein Meis1
4xrs_B3e-16393450158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G422900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963319.10.0BEL1-like homeodomain protein 7
RefseqXP_004963320.10.0BEL1-like homeodomain protein 7
RefseqXP_004963321.10.0BEL1-like homeodomain protein 7
TrEMBLK3Z4G80.0K3Z4G8_SETIT; Uncharacterized protein
STRINGSi021437m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-111BEL1-like homeodomain 6