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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G422900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | TALE | ||||||||
Protein Properties | Length: 648aa MW: 71973.2 Da PI: 5.9988 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.9e-09 | 406 | 443 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +q+++WF N R + Sevir.3G422900.1.p 406 FEHflHPYPKDSEKMMLARQTGLTRSQISNWFINARVR 443 665559******************************88 PP | |||||||
2 | BELL | 119.6 | 1.4e-38 | 269 | 340 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi Sevir.3G422900.1.p 269 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQSVVSSFDVVAGPGAAKPYTAVALQTISRHFRCLKDAINDQI 340 689*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.6E-57 | 195 | 338 | IPR006563 | POX domain |
Pfam | PF07526 | 8.1E-52 | 201 | 336 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.39 | 384 | 447 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-9 | 387 | 451 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.22E-12 | 387 | 448 | No hit | No description |
SuperFamily | SSF46689 | 1.97E-17 | 388 | 454 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-28 | 390 | 453 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.1E-18 | 404 | 443 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 648 aa Download sequence Send to blast |
MMATYYSSPG SERDSQNMYS RDPGNASYPM PSALGNLLYL NNSTSGPYTE FSGILHPQQN 60 CMEMPDPGHP SVMSQDSSAR ESDMLGSHQG QRSFGPVKDM KNEMLMHMMD GSQSSTADLI 120 HDDAHNGAQL DFGVLNNHSS SNIPSVQGQG LSLSLNTQIL APSLPYWSVK PDMLSPHSYH 180 DSLRVDDIRM KSMQSEASRA IRNSRYLKAA QELLDEVVNV WKNIKQKAQK EQVEAGKTDG 240 KETEGGAKSE GSNPQESAAN AAPELSTAEK QELQNKMAKL MAMLDEVDRK YKHYYHQMQS 300 VVSSFDVVAG PGAAKPYTAV ALQTISRHFR CLKDAINDQI NVIRKKLGEE ENSSGKEGKL 360 TRLRYIDQQL RQQRAFQQYG MIPQNAWRPQ RGLPENSVTI LRAWLFEHFL HPYPKDSEKM 420 MLARQTGLTR SQISNWFINA RVRLWKPMIE DMYKDEIGDI EQDSNSSSDN APRSKGKMAS 480 SEDKEDLKSS TPRVCESSQL SESRASIGTM NIGGAPVGFQ NEPNPDDSFM NLMLKDQRSN 540 EADGGLLLHN AVAHHQDENA RFMAYHLAEL GRYGNGNVSL TLGLQHSSSS LSVPNAQQSF 600 PGVGDDDIYN ATAPLGVSVA SSDYESMNQM DQRQRFEQSP LLHDFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 3e-16 | 393 | 450 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-16 | 393 | 450 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G422900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963319.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_004963320.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_004963321.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
TrEMBL | K3Z4G8 | 0.0 | K3Z4G8_SETIT; Uncharacterized protein | ||||
STRING | Si021437m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP901 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-111 | BEL1-like homeodomain 6 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G422900.1.p |