PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G405000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | YABBY | ||||||||
Protein Properties | Length: 197aa MW: 22068.1 Da PI: 8.9999 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 240 | 5.1e-74 | 4 | 168 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 + +++vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+ ++ l+ ++h + +l + +++ ++ ++ n+ + s+s Sevir.3G405000.1.p 4 HIAPADHVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVNLRALMHSLPEQDH-----QLQLFDSQENIKHGINGNHLEFGSSS 89 56789******************************************************9.....33344555555555666666666666 PP YABBY 94 tsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + ++ ++ne++ ++++ rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl Sevir.3G405000.1.p 90 SKFRLPMMysPQNEHHLLQEQTLNARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 168 6666666642444444444444488****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-73 | 7 | 168 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.67E-8 | 114 | 162 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.1E-5 | 115 | 162 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MSAHIAPADH VCYVHCNFCN TVLAVSVPGN SMLNIVTVRC GHCTNLLSVN LRALMHSLPE 60 QDHQLQLFDS QENIKHGING NHLEFGSSSS KFRLPMMYSP QNEHHLLQEQ TLNARPPEKR 120 QRVPSAYNRF IKEEIRRIKA NNPDISHREA FSTAAKNWAH YPNIHFGLSS GREGGKKLVD 180 EAVSVTPPPK KIQGLY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G405000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035812 | 1e-87 | BT035812.1 Zea mays full-length cDNA clone ZM_BFb0084F06 mRNA, complete cds. | |||
GenBank | BT041668 | 1e-87 | BT041668.1 Zea mays full-length cDNA clone ZM_BFb0028G13 mRNA, complete cds. | |||
GenBank | BT068409 | 1e-87 | BT068409.1 Zea mays full-length cDNA clone ZM_BFb0157I12 mRNA, complete cds. | |||
GenBank | KJ726849 | 1e-87 | KJ726849.1 Zea mays clone pUT3389 C2C2-YABBY transcription factor (YAB5) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963174.1 | 1e-147 | protein YABBY 6 isoform X1 | ||||
Swissprot | Q2QM17 | 1e-89 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | A0A368QNF4 | 1e-145 | A0A368QNF4_SETIT; Uncharacterized protein | ||||
STRING | Si023308m | 1e-146 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-60 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G405000.1.p |