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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G398600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | CPP | ||||||||
Protein Properties | Length: 772aa MW: 83385.5 Da PI: 7.248 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.7 | 7.5e-16 | 459 | 497 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+C+CkkskClk+YCeCfaag++Cse C+C++C N+e Sevir.3G398600.1.p 459 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCTCQGCLNNE 497 689**********************************98 PP | |||||||
2 | TCR | 52 | 1.4e-16 | 544 | 582 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN Sevir.3G398600.1.p 544 RHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNA 582 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.6E-17 | 458 | 499 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.802 | 459 | 584 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.5E-11 | 461 | 497 | IPR005172 | CRC domain |
SMART | SM01114 | 2.5E-17 | 544 | 585 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.7E-12 | 546 | 582 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 772 aa Download sequence Send to blast |
MDTPDRPRAA AAAGFEDSPV FNFINNLSPI PPPKPSDRAH NVQLFKSSDL APVSSIFASP 60 HVNPAKEPKI LIRDDSVQLP QELHSPSSVR TRVGSSITFR MIRCRDIVSE NCNTTCRLNE 120 ASIDSSDHTS NSESQLPQST QNGVGSVETN KDQCADGKTD LTISQECTDL ESMNLDESGP 180 DKMDSSHSGI DLHENQLSEQ NKDEPAAYNG DYMITNQPCG DMLTLGLPFG TETQSVNDTQ 240 KAENSYPGKS LMNEESSDHY TQNSAHEPHH YWTGAVEGAA VNYTPQALPG ALQSQLMPCN 300 KLNEPRDYMP TEQNALSQHL RGMRRRSLFN EKAGASNKGV DKASDHHSVN STTPKCKTIS 360 GDINSKPLRT PPCALPGIGL HLNALAAIPK EKIVSRDIHS TINESSSLPC PAGSSPLPYE 420 QNIINDDFAQ TTDIVSAEPS SQGSPKKKRH KFDNGDGTSC KRCSCKKSKC LKLYCECFAA 480 GVYCSEPCTC QGCLNNEIHM ETVLSTRQQI ESRNPLAFAP KVIHTSEPGL ELGDFNNKTP 540 ASARHKRGCN CKKSSCLKKY CECFQGGVGC SISCRCEGCK NAFGRREGVA ALSIEEPKQA 600 SEESNACVKE EKCEIDKQLV IYQATDLAAA ENLLTTPSMV ECRPLACLPP PSSKKPSSKK 660 PRSSAKSGNP SRLCNSQAPL KTDILLAQFG NYAEMVLGDS TTDTLKGNSS PQTSVKVVSP 720 NKKRVSPPRM GTGLSPICKS GRKLILKSIP SFPSLGGDFN NEDSKSKAPA P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-15 | 463 | 581 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 4e-15 | 463 | 581 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G398600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963116.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A368QN90 | 0.0 | A0A368QN90_SETIT; Uncharacterized protein | ||||
STRING | Si021159m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12746 | 26 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 3e-75 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G398600.1.p |