PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G394300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 266aa    MW: 28389.2 Da    PI: 8.9573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G394300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32e-16108156355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +ahn  E+rRR++iN++f +L++l+P +    + K + a++L ++++Y++sLq
  Sevir.3G394300.1.p 108 EAHNLTEKRRRHKINEGFRTLQQLVPGC----DDKSNQAATLDQTIQYMRSLQ 156
                         58*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.16E-18102164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.98105155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-19105163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-14108160No hitNo description
PfamPF000103.9E-14108156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-14111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MLPVADVWPP LPADVRFDPP SEDEMAAWLR AIVEGEDDLA INDGDGGRQQ TAGARDVPEK  60
ERPSDTSSTT TADKKEKLPM TEGMGSTKQE MRKTPAGGGS SRRSHHGEAH NLTEKRRRHK  120
INEGFRTLQQ LVPGCDDKSN QAATLDQTIQ YMRSLQQHVK AMSYDGPARP AAAVYPVVQP  180
QYVPPVAPAA VPMPAAPMMV LAPAPAATMV VPFGDMVQLL PHYPAAAVMM PAAAAPQYPA  240
AAASHRQGSS SSKGKGGSRS MRQKH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G394300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806979.14e-78putative transcription factor bHLH056
TrEMBLA0A368QN391e-147A0A368QN39_SETIT; Uncharacterized protein
TrEMBLK3ZEG31e-147K3ZEG3_SETIT; Uncharacterized protein
STRINGSi024958m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.19e-14bHLH family protein