PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G394200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 268aa    MW: 28498.8 Da    PI: 10.1504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G394200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.95e-15100147355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +ah+  E+rRR++iN+++ +L++l+P +      K + a++L ++++Y+ksLq
  Sevir.3G394200.1.p 100 EAHKLTEKRRRHKINERLRTLQQLVPGC-----DKSNQASTLDHTIQYMKSLQ 147
                         58*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1795154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.10197146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.86E-14100151No hitNo description
PfamPF000101.3E-12100147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-18100154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-14103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MQPAAESCRL WSPPPEVPFD PPSEDEMTAW LCAIVKGEEL VAFNAAGRDV PPAPKRSSGS  60
STTTTSGTKE KLPKTEVMGT KQEIRKPPAV RESSRSDHGE AHKLTEKRRR HKINERLRTL  120
QQLVPGCDKS NQASTLDHTI QYMKSLQHHV QEMSGVGPAS PAAVPVVPPQ YAPPMAPVAV  180
PTMMPAAPMV LAPAPTTMVP FGAMVQLPHY PAAAVPVMMP AAAAHLYPAA APVRAAVAPE  240
GAESSVTRRH GSSRSKGKCG SSLRKKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253265RSKGKCGSSLRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G394200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699853.11e-149transcription factor APG isoform X1
TrEMBLK3ZDG61e-147K3ZDG6_SETIT; Uncharacterized protein
STRINGSi024602m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.16e-17bHLH family protein