PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G393800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 361aa    MW: 38595.9 Da    PI: 10.6213
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G393800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31294351359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Sevir.3G393800.1.p 294 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 351
                         9*************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.9E-19245290IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.3E-34280351IPR003657WRKY domain
PROSITE profilePS5081130.148287350IPR003657WRKY domain
SuperFamilySSF1182905.23E-27290351IPR003657WRKY domain
SMARTSM007744.4E-38292352IPR003657WRKY domain
PfamPF031064.9E-27294350IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEEVEVANRA AVESCHRVLS LLSQSQQQDP ALLKSIASET GEACAKFRKV TALLANGGSS  60
GHARGRFYRR GRPSGFLTLK GILGSSSDTP SELMPSAAAA AAAPSPSTSY AQLRSRIGGV  120
PDPRGLDLAS SSSKSGAHPY GAPKMVQPLS VQFQIGNVAH RYPFHQQPSR QKLQAEMFKR  180
SNSGISLKFD SPSPSGGAGM MSSARSFMSS LSMDGSVASL DGKRPFHLVG APVASDPADA  240
HRAPKRRCMG QGQDGTGKCA TTGRCHCSKR RKLRIKRSIK VPAISNKIAD IPPDEYSWRK  300
YGQKPIKGSP HPRGYYKCSS VRGCPARKHV ERCVDDPAML IVTYEGEHNH TRLPAQSAQT  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20280355276WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246RAPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G393800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809630.10.0protein WRKY1-like isoform X1
SwissprotQ93WU65e-90WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A2T7EIW20.0A0A2T7EIW2_9POAL; Uncharacterized protein
TrEMBLA0A2T8KLW40.0A0A2T8KLW4_9POAL; Uncharacterized protein
STRINGPavir.J38176.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-62WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]