PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G389900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 365aa    MW: 41761.7 Da    PI: 8.7667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G389900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.14.8e-1639127299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         fk +     +++g +++p kf+++ +g+ ++   l l+ +sg++W +++    ++++ ++ +GW +F++a++L+e+D ++F+ +g+ +f  
  Sevir.3G389900.1.p  39 FKFM--TGDFAQG-ISIPEKFVSNLNGQITK--GLNLKAPSGETWLIEV--AENGDELFFMSGWDDFARAHELQENDLLIFTCSGNYSF-- 120
                         5555..4445555.9*******887877555..5***************..99*9**99999********************9998888.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                          v++f++
  Sevir.3G389900.1.p 121 DVQIFDA 127
                         9999987 PP
2B3376.1e-122673551099
                         HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                  B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                          +k+++l++   fa++h +g   ++  l l+  + ++W v++ y  ++ r +    W +Fv +n+L+   +++F+l++  +++++vv+v+r
  Sevir.3G389900.1.p 267 GHKNNLLIVHHGFAADHlEGR--SHDILLLRPNRKKKWYVRY-YHASRARGFNCCRWIKFVGDNRLRKDHICIFELMKGaRRTTMVVHVLR 354
                         457788999999**9996444..333455556888*******.5444444334456*******************99887*********99 PP

                         S CS
                  B3  99 k 99 
                         k
  Sevir.3G389900.1.p 355 K 355
                         7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-2133130IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.32435128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-2037130IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-1637126No hitNo description
PfamPF023622.2E-1338127IPR003340B3 DNA binding domain
SMARTSM010195.5E-938128IPR003340B3 DNA binding domain
SuperFamilySSF1019361.82E-14250354IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-14251354IPR015300DNA-binding pseudobarrel domain
CDDcd100179.55E-11255354No hitNo description
SMARTSM010191.2E-5257356IPR003340B3 DNA binding domain
PROSITE profilePS508639.545258356IPR003340B3 DNA binding domain
PfamPF023626.7E-10268355IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MPIRECRMSK MVQQGCESCR KWQEHCYLEH MGASKVRFFK FMTGDFAQGI SIPEKFVSNL  60
NGQITKGLNL KAPSGETWLI EVAENGDELF FMSGWDDFAR AHELQENDLL IFTCSGNYSF  120
DVQIFDASGC EKVPCFFTSK KGPCTHKHSD GIVDQQAEHC ILSDSDDLRM PMRLIGSPNK  180
ASTSKKKSGK TKPRKEPESP NSNYHIKQEL ISDEEQSDDR LVDSNYYYYS RSASNLTGDE  240
RDQIFSLALI RPGNPAFVAV LQKTHIGHKN NLLIVHHGFA ADHLEGRSHD ILLLRPNRKK  300
KWYVRYYHAS RARGFNCCRW IKFVGDNRLR KDHICIFELM KGARRTTMVV HVLRKVDGRF  360
VLVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G389900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808341.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-155Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A368QPU80.0A0A368QPU8_SETIT; Uncharacterized protein
STRINGSi024235m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-28B3 family protein