PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.3G388900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 291aa MW: 33168.1 Da PI: 10.3498 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.4 | 8.6e-16 | 3 | 79 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++p+kf++++ ++ s +l+le ++g+++ v++ +++ vl++GW +F+ a +Lk gD +vF+ ++s f +v++f+ Sevir.3G388900.2.p 3 TIPRKFVANIR--EHLSEELKLEAPDGKTYAVQV--ATEQNELVLRTGWPDFATAYELKFGDLLVFRNCKNSHF--KVRLFDP 79 79*****8886..458889***************..99999**************************5565666..8888875 PP | |||||||
2 | B3 | 54.8 | 1.7e-17 | 203 | 287 | 15 | 99 |
-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 l + ++a+++ ++e++t++l+ + +We + r k +ry+l++GW++Fv++n+Lk gD+++F+l+++ ++ ++ v+++rk Sevir.3G388900.2.p 203 FLEFAIDYATKYL--PRENQTMRLRRPGPskdDTWEAVF--RVKNRRYTLGRGWRHFVDDNKLKPGDICLFSLMKNtKKLTMDVHIIRK 287 4555555565553..556779999996555569******..999999***************************999*********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.3E-4 | 1 | 80 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.479 | 1 | 80 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.78E-15 | 3 | 78 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-18 | 3 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-18 | 3 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.4E-13 | 3 | 78 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-20 | 183 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.8E-21 | 183 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.05E-15 | 188 | 286 | No hit | No description |
PROSITE profile | PS50863 | 13.155 | 189 | 288 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-7 | 190 | 288 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-15 | 204 | 287 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MQTIPRKFVA NIREHLSEEL KLEAPDGKTY AVQVATEQNE LVLRTGWPDF ATAYELKFGD 60 LLVFRNCKNS HFKVRLFDPS GCEKELSCVL MDGAPCVQER KVSHGDHTQS PTGKRMEIGS 120 PSGSRKTSKM NPIDSPSQRR GHVPSARTKS PRHGVAKPPY ILPRYTTLND QQKNEVDKKV 180 GAIESKIPIY VATMCNSNTA RAFLEFAIDY ATKYLPRENQ TMRLRRPGPS KDDTWEAVFR 240 VKNRRYTLGR GWRHFVDDNK LKPGDICLFS LMKNTKKLTM DVHIIRKRSM * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.3G388900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963037.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080 | ||||
TrEMBL | A0A368QMS7 | 0.0 | A0A368QMS7_SETIT; Uncharacterized protein | ||||
STRING | Si022802m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-19 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.3G388900.2.p |