PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G388900.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 291aa    MW: 33168.1 Da    PI: 10.3498
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G388900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.6e-163791799
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        ++p+kf++++   ++ s +l+le ++g+++ v++     +++ vl++GW +F+ a +Lk gD +vF+  ++s f  +v++f+ 
  Sevir.3G388900.2.p  3 TIPRKFVANIR--EHLSEELKLEAPDGKTYAVQV--ATEQNELVLRTGWPDFATAYELKFGDLLVFRNCKNSHF--KVRLFDP 79
                        79*****8886..458889***************..99999**************************5565666..8888875 PP
2B354.81.7e-172032871599
                         -EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  15 rlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                          l +  ++a+++   ++e++t++l+ +      +We  +  r k +ry+l++GW++Fv++n+Lk gD+++F+l+++ ++ ++ v+++rk
  Sevir.3G388900.2.p 203 FLEFAIDYATKYL--PRENQTMRLRRPGPskdDTWEAVF--RVKNRRYTLGRGWRHFVDDNKLKPGDICLFSLMKNtKKLTMDVHIIRK 287
                         4555555565553..556779999996555569******..999999***************************999*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.3E-4180IPR003340B3 DNA binding domain
PROSITE profilePS5086313.479180IPR003340B3 DNA binding domain
CDDcd100171.78E-15378No hitNo description
Gene3DG3DSA:2.40.330.103.5E-18382IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-18382IPR015300DNA-binding pseudobarrel domain
PfamPF023624.4E-13378IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-20183287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-21183287IPR015300DNA-binding pseudobarrel domain
CDDcd100177.05E-15188286No hitNo description
PROSITE profilePS5086313.155189288IPR003340B3 DNA binding domain
SMARTSM010198.1E-7190288IPR003340B3 DNA binding domain
PfamPF023622.2E-15204287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MQTIPRKFVA NIREHLSEEL KLEAPDGKTY AVQVATEQNE LVLRTGWPDF ATAYELKFGD  60
LLVFRNCKNS HFKVRLFDPS GCEKELSCVL MDGAPCVQER KVSHGDHTQS PTGKRMEIGS  120
PSGSRKTSKM NPIDSPSQRR GHVPSARTKS PRHGVAKPPY ILPRYTTLND QQKNEVDKKV  180
GAIESKIPIY VATMCNSNTA RAFLEFAIDY ATKYLPRENQ TMRLRRPGPS KDDTWEAVFR  240
VKNRRYTLGR GWRHFVDDNK LKPGDICLFS LMKNTKKLTM DVHIIRKRSM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G388900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963037.10.0B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A368QMS70.0A0A368QMS7_SETIT; Uncharacterized protein
STRINGSi022802m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-19B3 family protein