PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G386500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 26704.1 Da PI: 7.4732 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00088 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F++ L H +H Sevir.3G386500.1.p 99 HACSVCGKAFPSYQALGGHKASH 121 67**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0015 | 162 | 181 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ Cgk F++ L H Sevir.3G386500.1.p 162 HECNVCGKAFPTGQALGGHK 181 78*********988886665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.48E-9 | 98 | 121 | No hit | No description |
Pfam | PF13912 | 3.4E-13 | 99 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.385 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.043 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.48E-9 | 157 | 184 | No hit | No description |
Pfam | PF13912 | 2.6E-13 | 161 | 186 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.063 | 162 | 184 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 162 | 184 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.9E-5 | 162 | 184 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 164 | 184 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAVEAVLDAV VMPSPISSTP PDVVAATSSE EEASSTAREG ADGWAKRKRS RRRRQQLLQG 60 AMLPREPTEE EYLALCLVTM ASGRRDVAAP APPPPQELHA CSVCGKAFPS YQALGGHKAS 120 HRAKPPVSPA GSLIRDEDAK QHAAPAPAPA PSSSAEAKAS AHECNVCGKA FPTGQALGGH 180 KRCHYDGTIG SAAAPARSAS SSAATTRVSS TTTAAGGGFD LNLPALPEIP ERCAAAPEEE 240 EEVLSPIAFK KPRFMIPA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G386500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955742 | 1e-48 | EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963019.1 | 1e-131 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 1e-44 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | K3Z8Z3 | 1e-129 | K3Z8Z3_SETIT; Uncharacterized protein | ||||
STRING | Si023013m | 1e-130 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19580.2 | 8e-28 | zinc-finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G386500.1.p |