PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G366400.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 572aa MW: 60161.9 Da PI: 6.5077 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 191 | 212 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f ++ C++Gd C +aHg Sevir.3G366400.3.p 191 PCPEFKKGAGCRRGDMCEYAHG 212 8******88************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.5E-10 | 23 | 104 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.71E-9 | 23 | 105 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 12.594 | 25 | 96 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.805 | 61 | 96 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 9.8E-4 | 186 | 213 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-4 | 189 | 214 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.258 | 191 | 214 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 87 | 222 | 245 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.925 | 222 | 246 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MADASEAAAA ISARLLELAA EDDAEPMTPL MVAAAYGSVG CVDVLLSPPH LVDPNRASPA 60 SLSTALHLAA AGGASSAPAA VSRLLSAGAD PTLLDHLHRR PSDLVTLPPS SLPLKNHLLS 120 LLGARKEWPP DPSLPDIKNG AYASDDFRMY SFKVRACSRA YSHDWTECPF VHPGENARRR 180 DPRKYHYSCV PCPEFKKGAG CRRGDMCEYA HGVFESWLHP AQYRTRLCKD GVGCARRVCF 240 FAHTPEELRP LYVSSAGSRS AMEMAAAMGM GLPSPGASFT PPLSPSGGGG GVAGAWPQPN 300 VPALCLPGSA GNLHLSRLRT SLSARSMAAD ELLASADYDG LVGSPASVRS ARGKTLVPSN 360 LDDLFSAEMA VAAASHSPRF ADQGGAAFSP TRKAAMLNQF QQQQSLLSPR ATAAAVIPEP 420 VSPMSSRLLA ALAQREKMQQ QTLRSMSSRD LGSGASVLVG SPVTSSWSKW GIPSGTPDWG 480 ADDEELGRLK RSSSFELRSG ANGDEPDLSW VNTLVKEPTP EKPFINGTTA MESIGTLSQA 540 ASHEGIGGGE DNTAGVIGSW LEQLQLDEMV V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G366400.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962884.1 | 0.0 | zinc finger CCCH domain-containing protein 67 | ||||
Refseq | XP_004962885.1 | 0.0 | zinc finger CCCH domain-containing protein 67 | ||||
Swissprot | Q2QPW2 | 0.0 | C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67 | ||||
TrEMBL | K3Z4S2 | 0.0 | K3Z4S2_SETIT; Uncharacterized protein | ||||
STRING | Si021540m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-135 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G366400.3.p |