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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sevir.3G353500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
NF-YC |
Protein Properties |
Length: 468aa MW: 50982.3 Da PI: 5.0094 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.3G353500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 82 | 7.2e-26 | 25 | 121 | 4 | 97 |
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91
fw k+ ie +df n+++P++rikk++ ++ m++ ++P +l+kace+f+ e+++rsw+ a++++r+ + sdi++a+++t+ +df
Sevir.3G353500.1.p 25 DFWRKRqveIEAIQDFGNRAIPMTRIKKVICDEKGKMMMTFDTPSFLTKACEIFVQEIAFRSWMCANSSQRSIILDSDITEAIASTQSYDF 115
69988767799********************999999****************************************************** PP
NF-YC 92 lvdivp 97
l d
Sevir.3G353500.1.p 116 LNDFLN 121
**9865 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 468 aa
Download sequence Send
to blast |
MDHRIEIRSS PRTPMPLSQQ EMIDDFWRKR QVEIEAIQDF GNRAIPMTRI KKVICDEKGK 60 MMMTFDTPSF LTKACEIFVQ EIAFRSWMCA NSSQRSIILD SDITEAIAST QSYDFLNDFL 120 NAHQDEHRSY PYPKPTKKRH RLLTNLPSSS CHLPPHQNQL PQFSHQFTRY PPSVHIPPLV 180 VPQTNGPRVP LPLASLPYEA SSVIATTGTP APVVSGIIPP TNYMGNGLGS FGNTIKKIAA 240 SSGVMNHLKE LPRALANIPN TYCYMNMVAS ASVYGVDSAS SSNVAAQDSG MAFHCPYIPQ 300 ITLQLPSPLQ TTITSAHTTT NITIENYIDV GVAATKSTIH ASSTTNGNGD IDPNAIGVGD 360 DQHQHEEEAN TSLEVNGVHG SLDAQAVAAA SIGNDINWDE FDMLDDSLLS VVGKDIVMDE 420 EPAPLPNTAS NDDLLLASNM SNLEGFSHEP YLLDDIISSA GTSKRCT*
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