PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G311800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 1394aa    MW: 154879 Da    PI: 7.9121
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G311800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002312741297122
                          EEET..TTTEEESSHHHHHHHHHH CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                          ++C    C++sFs++ +L  H r 
  Sevir.3G311800.2.p 1274 FSCDieGCDMSFSTQQDLALHKRD 1297
                          899999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF511971.32E-2495334No hitNo description
SMARTSM005583.8E-46168337IPR003347JmjC domain
PROSITE profilePS5118435.369168337IPR003347JmjC domain
PfamPF023733.8E-36201320IPR003347JmjC domain
SMARTSM003559.712741296IPR015880Zinc finger, C2H2-like
SMARTSM003551512971321IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88712971326IPR007087Zinc finger, C2H2
PROSITE patternPS00028012991321IPR007087Zinc finger, C2H2
SuperFamilySSF576672.55E-913131355No hitNo description
Gene3DG3DSA:3.30.160.602.2E-913241351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00213271351IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.34413271356IPR007087Zinc finger, C2H2
PROSITE patternPS00028013291351IPR007087Zinc finger, C2H2
SuperFamilySSF576674.2E-813451379No hitNo description
Gene3DG3DSA:3.30.160.602.9E-913521380IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.28413571388IPR007087Zinc finger, C2H2
SMARTSM003551.113571383IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013591383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1394 aa     Download sequence    Send to blast
MSPPAVETPE WLRNLPVAPE YHPTAAEFVD PIAYILKIEA TVERLKASFA ANAAAAAGVD  60
GAAPAPTFPT RLQQVGFSTK NRRPASRRVW ESGERYTLEA FRAKARDIEL PRHAVPPKHA  120
TQLQLEALFW GACAARPFNV EYGNDMPGSG FAAPKEGGGG NAALAARDVG ETEWNMRLAP  180
RARGSLLRAM GRDVAGVTTP MLYVAMLYSW FAWHVEDHEL HSLNYLHFGK PKTWYGVPRD  240
AMLAFEDAVR VHGYADDLNA IMAFQTLNEK TTVLSPEVLL SAGVPCCRLV QNPGEFIITF  300
PGAYHSGFSH GFNCGEATNI ATPRWLQVAK EAAIRRASTN CGPLVSHYQL LYELALSLRP  360
RELKDSHGVP RSSRLRDKKK NEGEIMIKET FVGSVIENNN FLSILLDKSS CVIIPEIKFP  420
LPSFPTSMAP EVTVKQGLIA GTCSISQKKA EDMLAYGNAI DEIKGFEKMS ESQSSSATTS  480
SACNGRKLYE TKFGMVNSSA LLLNSEIQSG VIEKGGSHQG CGLLDQGRLP CVQCGILSYA  540
CVAIIQPKEA AVQYVISQEC MSSSAKHGEI MKSNDTSNWI TTVPPQGHSS ETDDNRIHNM  600
SSARVSDRCR QLYTSSTHGC ASALGLLASA YESSDSDEEA EAPDNISNNS ANNDAVNGIT  660
NIQSSGTSVQ YQNTNLHLYE EGCDSRATVS PMKPVENMSI AMTQASIETD MTHLADLGES  720
LTAYDQWSTY LDLDDDPTAP GVKASLSTSF SRAKGAMEPD ALTLLKYSKD SCRMHVFCLE  780
HALETWTRLQ QFGGANIVLL CHPEYPKAES AAKVIAEELG MKHAWKDITF KNATDEDIGR  840
IRLALQDEDA EPTSSDWAVK MGINIYYSAK QSKSPLYSKQ VPYNSIIYKA FAQENPDSLT  900
DERQRSGTTK KKVAGSWCGK IWMSNQVHPL LDREREEQDH DMVYSKAMVS VNSYDRIQEP  960
SARSTSLINR SLSKRVSRRK EGDSVERAKK KRYTASDVAT FDQPRNFDDH GKHESDGDEN  1020
ENEDAQKTLQ HQHESEKTNK NSSSKRRKDD KRNNNFYERH NDSDDHDYRL GIDSTENTTV  1080
GDCDNSPPQG LDVVKVKSDT QLQGSKKKSS KCKASDDLSN VEKRLQKMVK KVSTKKHKND  1140
KTNRQFQEKH SKDNNVDLLH EDNGDEATQE NWDGVQQKTN DVKVKSRGKM HSGKKKASKC  1200
QTSDGLHNGD NEAKFSCDTD VCHRDKATID KWEEIPKEKA DDVKVKSKMQ SGKKKASKHP  1260
ASDGLRNGDK GAKFSCDIEG CDMSFSTQQD LALHKRDICP VKGCKKKFFC HKYLLQHRKV  1320
HLDERPLMCS FTGCKKTFKW PWARTEHMRV HTGVRPYACT EPGCTQTFRF VSDFSRHKRK  1380
TGHSCDKKKK NST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-60103587353Transcription factor jumonji (Jmj) family protein
6ip4_A1e-60103587353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1977991RRKEGDSVERAKKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G311800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807104.10.0lysine-specific demethylase JMJ705-like
TrEMBLA0A2T7EFS10.0A0A2T7EFS1_9POAL; Uncharacterized protein
STRINGPavir.Cb01041.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-149relative of early flowering 6