PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G311800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 1415aa    MW: 157126 Da    PI: 7.9538
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G311800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002412951318122
                          EEET..TTTEEESSHHHHHHHHHH CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                          ++C    C++sFs++ +L  H r 
  Sevir.3G311800.1.p 1295 FSCDieGCDMSFSTQQDLALHKRD 1318
                          899999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.7E-171758IPR003349JmjN domain
PROSITE profilePS5118313.8831859IPR003349JmjN domain
PfamPF023751.3E-131952IPR003349JmjN domain
SuperFamilySSF511971.37E-24116355No hitNo description
SMARTSM005583.8E-46189358IPR003347JmjC domain
PROSITE profilePS5118435.369189358IPR003347JmjC domain
PfamPF023733.9E-36222341IPR003347JmjC domain
SMARTSM003559.712951317IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88713181347IPR007087Zinc finger, C2H2
SMARTSM003551513181342IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013201342IPR007087Zinc finger, C2H2
SuperFamilySSF576672.65E-913341376No hitNo description
Gene3DG3DSA:3.30.160.602.2E-913451372IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.34413481377IPR007087Zinc finger, C2H2
SMARTSM003550.00213481372IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013501372IPR007087Zinc finger, C2H2
SuperFamilySSF576674.42E-813661400No hitNo description
Gene3DG3DSA:3.30.160.603.0E-913731401IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.28413781409IPR007087Zinc finger, C2H2
SMARTSM003551.113781404IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013801404IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1415 aa     Download sequence    Send to blast
MSPPAVETPE WLRNLPVAPE YHPTAAEFVD PIAYILKIEA EASRYGICKI VPPLAPPPRE  60
ATVERLKASF AANAAAAAGV DGAAPAPTFP TRLQQVGFST KNRRPASRRV WESGERYTLE  120
AFRAKARDIE LPRHAVPPKH ATQLQLEALF WGACAARPFN VEYGNDMPGS GFAAPKEGGG  180
GNAALAARDV GETEWNMRLA PRARGSLLRA MGRDVAGVTT PMLYVAMLYS WFAWHVEDHE  240
LHSLNYLHFG KPKTWYGVPR DAMLAFEDAV RVHGYADDLN AIMAFQTLNE KTTVLSPEVL  300
LSAGVPCCRL VQNPGEFIIT FPGAYHSGFS HGFNCGEATN IATPRWLQVA KEAAIRRAST  360
NCGPLVSHYQ LLYELALSLR PRELKDSHGV PRSSRLRDKK KNEGEIMIKE TFVGSVIENN  420
NFLSILLDKS SCVIIPEIKF PLPSFPTSMA PEVTVKQGLI AGTCSISQKK AEDMLAYGNA  480
IDEIKGFEKM SESQSSSATT SSACNGRKLY ETKFGMVNSS ALLLNSEIQS GVIEKGGSHQ  540
GCGLLDQGRL PCVQCGILSY ACVAIIQPKE AAVQYVISQE CMSSSAKHGE IMKSNDTSNW  600
ITTVPPQGHS SETDDNRIHN MSSARVSDRC RQLYTSSTHG CASALGLLAS AYESSDSDEE  660
AEAPDNISNN SANNDAVNGI TNIQSSGTSV QYQNTNLHLY EEGCDSRATV SPMKPVENMS  720
IAMTQASIET DMTHLADLGE SLTAYDQWST YLDLDDDPTA PGVKASLSTS FSRAKGAMEP  780
DALTLLKYSK DSCRMHVFCL EHALETWTRL QQFGGANIVL LCHPEYPKAE SAAKVIAEEL  840
GMKHAWKDIT FKNATDEDIG RIRLALQDED AEPTSSDWAV KMGINIYYSA KQSKSPLYSK  900
QVPYNSIIYK AFAQENPDSL TDERQRSGTT KKKVAGSWCG KIWMSNQVHP LLDREREEQD  960
HDMVYSKAMV SVNSYDRIQE PSARSTSLIN RSLSKRVSRR KEGDSVERAK KKRYTASDVA  1020
TFDQPRNFDD HGKHESDGDE NENEDAQKTL QHQHESEKTN KNSSSKRRKD DKRNNNFYER  1080
HNDSDDHDYR LGIDSTENTT VGDCDNSPPQ GLDVVKVKSD TQLQGSKKKS SKCKASDDLS  1140
NVEKRLQKMV KKVSTKKHKN DKTNRQFQEK HSKDNNVDLL HEDNGDEATQ ENWDGVQQKT  1200
NDVKVKSRGK MHSGKKKASK CQTSDGLHNG DNEAKFSCDT DVCHRDKATI DKWEEIPKEK  1260
ADDVKVKSKM QSGKKKASKH PASDGLRNGD KGAKFSCDIE GCDMSFSTQQ DLALHKRDIC  1320
PVKGCKKKFF CHKYLLQHRK VHLDERPLMC SFTGCKKTFK WPWARTEHMR VHTGVRPYAC  1380
TEPGCTQTFR FVSDFSRHKR KTGHSCDKKK KNST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-68103797353Transcription factor jumonji (Jmj) family protein
6ip4_A3e-68103797353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19981012RRKEGDSVERAKKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G311800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807104.10.0lysine-specific demethylase JMJ705-like
TrEMBLA0A2T7EFS10.0A0A2T7EFS1_9POAL; Uncharacterized protein
STRINGBRADI4G39130.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-159relative of early flowering 6