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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sevir.3G266100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
SRS |
| Protein Properties |
Length: 304aa MW: 30555.8 Da PI: 8.7242 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.3G266100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 193 | 1e-59 | 88 | 257 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstkl 91
+sg+a+C+dCGnqakk+Cah+RCRtCC+srgf+C+thv+stWvpaa+rrer q + + + ++ aa+k++r +++++++ s+t++
Sevir.3G266100.1.p 88 GSGAATCHDCGNQAKKGCAHNRCRTCCNSRGFECETHVRSTWVPAARRRERLQLAGGGAGASPPPTSPAAAKKPRLAcQTTTATTNSRTST 178
57889**********************************************9999888877777778888888887745666777788999 PP
DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvddg......eeelaYqtavsigGhvfkGiLydqGlee 154
s+a+++++++tss lP++v+ +avfrcvrv+svddg e+aYq+av+i+Gh+f+G+Lyd+G+++
Sevir.3G266100.1.p 179 SNATTPRSFDTSSshqdasfkdnLPRQVRGPAVFRCVRVTSVDDGgggcggTGEVAYQAAVTINGHLFRGLLYDHGADT 257
9**********999******************************5233333679**********************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MFVVAPAGSL HHQRAADDPV FPLIAAAQRT LVDADAGSGK PPASSAAAAI QFWHPEPSQA 60
AAGADGSHGK KALAMLDQGR GGAGSGSGSG AATCHDCGNQ AKKGCAHNRC RTCCNSRGFE 120
CETHVRSTWV PAARRRERLQ LAGGGAGASP PPTSPAAAKK PRLACQTTTA TTNSRTSTSN 180
ATTPRSFDTS SSHQDASFKD NLPRQVRGPA VFRCVRVTSV DDGGGGCGGT GEVAYQAAVT 240
INGHLFRGLL YDHGADTDGR AAAAVQLGTS DLHLGSASAA APNLYSGASA PLILGGLGYG 300
NTP*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 1e-31 | Lateral root primordium (LRP) protein-related |
