PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G264300.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 411aa    MW: 44993.8 Da    PI: 8.8934
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G264300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18.1e-1770129155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Sevir.3G264300.2.p  70 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 129
                         57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-1770139IPR016177DNA-binding domain
CDDcd000188.90E-1170139No hitNo description
PfamPF008471.4E-1270129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-1671138IPR001471AP2/ERF domain
PROSITE profilePS5103219.83671137IPR001471AP2/ERF domain
SMARTSM003806.2E-2571143IPR001471AP2/ERF domain
PRINTSPR003674.2E-57283IPR001471AP2/ERF domain
PRINTSPR003674.2E-5119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MASPNPDAAG LAVPGAGEGS SSSFGAVAGA IVAAGEQPPR RALTVRKERV CTAKERISRM  60
PPCAAGKRSS IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK KGKQVYLGAY DDEEAAARAY  120
DLAALKYWGA GTQINFPVSD YARDLEEMQM ISKEDYLVSL RRKSSAFSRG LPKYRGLPRQ  180
LHNSRWDTSL GHLLGNDYMN LSCGKDIMLD GKFAGSFGLE RKLDLTNYIR WWLPKKTRQS  240
DTSKAEEIAD EVRAIESSMQ QTEPYKLPSL GLCSPSKPSS MGLSACNILS QSDAFKSFLE  300
KSTKSSEECT LSKEIVEGKA VGSVPATGHD TAAVNINMNE LLVQRATYSM APVMPTPMKS  360
TWSPADPSAD PLFWSNFVLP SSQPVTMATI TTATFAKNEV SSSDPFQSQE *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G264300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402580.0BT040258.1 Zea mays full-length cDNA clone ZM_BFc0073M24 mRNA, complete cds.
GenBankBT0540580.0BT054058.1 Zea mays full-length cDNA clone ZM_BFc0159N21 mRNA, complete cds.
GenBankBT0557190.0BT055719.1 Zea mays full-length cDNA clone ZM_BFb0137I19 mRNA, complete cds.
GenBankEU9668900.0EU966890.1 Zea mays clone 297967 AP2 domain transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962201.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-106AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLK3Z5Y40.0K3Z5Y4_SETIT; Uncharacterized protein
STRINGSi021952m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-104AP2 family protein