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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sevir.3G264300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
AP2 |
| Protein Properties |
Length: 416aa MW: 45543.4 Da PI: 8.7163 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.3G264300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53 | 8.3e-17 | 70 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g
Sevir.3G264300.1.p 70 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 129
57*******************766644468557*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MASPNPDAAG LAVPGAGEGS SSSFGAVAGA IVAAGEQPPR RALTVRKERV CTAKERISRM 60
PPCAAGKRSS IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK KGKQVYLGAY DDEEAAARAY 120
DLAALKYWGA GTQINFPVSD YARDLEEMQM ISKEDYLVSL RRKSSAFSRG LPKYRGLPRQ 180
LHNSRWDTSL GHLLGNDYMN LSCAFETTGK DIMLDGKFAG SFGLERKLDL TNYIRWWLPK 240
KTRQSDTSKA EEIADEVRAI ESSMQQTEPY KLPSLGLCSP SKPSSMGLSA CNILSQSDAF 300
KSFLEKSTKS SEECTLSKEI VEGKAVGSVP ATGHDTAAVN INMNELLVQR ATYSMAPVMP 360
TPMKSTWSPA DPSADPLFWS NFVLPSSQPV TMATITTATF AKNEVSSSDP FQSQE*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT040258 | 0.0 | BT040258.1 Zea mays full-length cDNA clone ZM_BFc0073M24 mRNA, complete cds. |
| GenBank | BT054058 | 0.0 | BT054058.1 Zea mays full-length cDNA clone ZM_BFc0159N21 mRNA, complete cds. |
| GenBank | BT055719 | 0.0 | BT055719.1 Zea mays full-length cDNA clone ZM_BFb0137I19 mRNA, complete cds. |
| GenBank | EU966890 | 0.0 | EU966890.1 Zea mays clone 297967 AP2 domain transcription factor mRNA, complete cds. |
