PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G251900.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 811aa    MW: 88850.9 Da    PI: 5.0434
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G251900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP112.32.8e-35176250276
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                         Cqv+gCead+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  Sevir.3G251900.2.p 176 CQVPGCEADIRELKGYHRRHRVCLRCAHASAVILDGVQKRYCQQCGKFHVLLDFDEDKRSCRRKLERHNKRRRRK 250
                         ************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-26172237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.598173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-33174253IPR004333Transcription factor, SBP-box
PfamPF031107.0E-27176250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MDAADSGGGG AADAGEPIWD WGNLLDFVVD GDDSLVLPWD DDAAGIGAAD PTEAAAPPLP  60
APMPQPVEVE AEPEPEPEAG PVLPPPPLRV QGIGRRVRKR DPRLVCPNYL AGMVPCACPE  120
VDEMVAAAEV EDVAAEFLAG ARKKTKTAAR RGKAGAAGVG GVAGGTARAA AMEMKCQVPG  180
CEADIRELKG YHRRHRVCLR CAHASAVILD GVQKRYCQQC GKFHVLLDFD EDKRSCRRKL  240
ERHNKRRRRK PDSKGLLDKE IDEQLDLSAD VSADGELREE NMEGTTSEML ETVLSNKVLD  300
RGTPAGSEDV LSSPTCTQPS LQTEQSKSVV TFAASVEACV GAKQENAKLT TNSPIHDTKS  360
AYSSSCPTGR ISFKLYDWNP AEFPRRLRHQ IFEWLASMPV ELEGYIRPGC TILTVFVAMP  420
QHMWDKLSDD AANLLRNLVN SPNSLLLGKG AFFIHVNNMI FQVLKDGATL MGTRLDVQSP  480
RIDYVYPTWF EAGKPVELIL CGSSLDQPKF RSLLSFDGDY LKHDCYRLKS LDTFNCIDNG  540
DLIVDSQHEI FRINITQSRP DIHGPAFVEV ENMFGLSNFV PILFGSKQLC SELERIQDAL  600
SGSSDSSLFG ELPGAPCDPC ERRKLQMAAM SGFLTDIGWL IRKPAPDEFK NVLSSTNIQR  660
WVCILKFLIR NDFMNVLEII VKSMDNIMGS EVLSNLEKGR LEDHVTAFLG YVSHARNIID  720
CRANNDKETQ LETRLISIDS PNQRSLGTSV PLANENAGAG GDNNMHSANA AYEEENVPLV  780
TRDVSHSLPC SFPPPWSRSA CISSKEVLVQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A4e-41175255585squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232250KRSCRRKLERHNKRRRRKP
2236248RRKLERHNKRRRR
3243250NKRRRRKP
4244249KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G251900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680518.10.0squamosa promoter-binding-like protein 9 isoform X2
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A368QIY20.0A0A368QIY2_SETIT; Uncharacterized protein
STRINGGRMZM2G109354_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-133squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]