PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G246200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 315aa    MW: 31963 Da    PI: 8.6284
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G246200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.54.8e-4377174198
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrrkC++dCv+apyfp e+p+kf  vh++FGasnv+k+l++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq++l+q++
  Sevir.3G246200.1.p  77 PCAACKFLRRKCQPDCVFAPYFPPENPQKFVHVHRVFGASNVTKILNELHPCQREDAVNSLAYEADMRLRDPVYGCVGVISILQHRLRQVQ 167
                         7****************************************************************************************** PP

              DUF260  92 aelallk 98 
                         +ela++ 
  Sevir.3G246200.1.p 168 QELARAS 174
                         ***9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.96576177IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-4377173IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MYISSKIRFL SAAPVYKGNP CCDLLRSPFS SRRGRSMAAS SASSVPPAST GSVVTVVSPS  60
TGGGSISGSS GAGAGSPCAA CKFLRRKCQP DCVFAPYFPP ENPQKFVHVH RVFGASNVTK  120
ILNELHPCQR EDAVNSLAYE ADMRLRDPVY GCVGVISILQ HRLRQVQQEL ARASYELSKY  180
QAAAEAAAAA AASVAVGSNG AAAAGMADFV GNPVPNCTQN FINVGHPTAA AAIGGAGFVQ  240
HDHFASVQML ARSYDGEAAT ARLGMNGGGG GYGFAYSSAM GAGHGVVSGV GQIGGGPFLK  300
SGTAGGDEQP AVAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-52731807114LOB family transfactor Ramosa2.1
5ly0_B1e-52731807114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G246200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7955601e-110AY795560.1 Triticum aestivum AS2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962077.10.0LOB domain-containing protein 6
RefseqXP_004962078.10.0LOB domain-containing protein 6
RefseqXP_004962079.10.0LOB domain-containing protein 6
RefseqXP_012700131.10.0LOB domain-containing protein 6
SwissprotQ32SG31e-112LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLK3ZC400.0K3ZC40_SETIT; Uncharacterized protein
STRINGSi024114m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.41e-53LBD family protein