 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.3G244200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NAC |
| Protein Properties |
Length: 414aa MW: 43980.7 Da PI: 8.0841 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.3G244200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 157.9 | 4.2e-49 | 49 | 174 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
+pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+++ + kew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +
Sevir.3G244200.1.p 49 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELIAFLDLYRFDPWELPAMAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMI 138
79***************************.89***************7767789************************************* PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++++ +glkktLvfy+g+apkg++++W+m+eyrl
Sevir.3G244200.1.p 139 RGENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 174
**********************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 414 aa
Download sequence Send
to blast |
MSRDLEDGQG AIDSAIVAAP GGGEGSIEAA AAGGGGEAAG DTHDNDVVMP GFRFHPTEEE 60
LIEFYLRRKV EGKRFNVELI AFLDLYRFDP WELPAMAVMG GKEWFFYVPR DRKYRNGDRP 120
NRVTASGYWK ATGADRMIRG ENNRPIGLKK TLVFYSGKAP KGVRSSWIMN EYRLPPPAAD 180
ADPLIPKSEI SLCRVYKRSG IDDGHGQSSS STQASSGRRI SSRTGVPTGR HGSSPSSTPL 240
SPTQQLSSFH LLQGECSSAS PPAPIMDQVV TVHSAPPQLL PPPRPCTYAP AATIRSAAAV 300
APQRAQGAAA LASTYSSLFN MAAAAPMAGI SRPPIDELST LVGPGQAGYA TLSAATGSHF 360
LPLMPAPPPM PQMTPLGALP MVQPPHSVTD KLSWDWNPVP DTAARDYDAS GFK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-54 | 50 | 199 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-54 | 50 | 199 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-54 | 50 | 199 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-54 | 50 | 199 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 5e-54 | 50 | 199 | 19 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 5e-54 | 50 | 199 | 19 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT060478 | 0.0 | BT060478.1 Zea mays full-length cDNA clone ZM_BFb0004F04 mRNA, complete cds. |
