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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.3G237700.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
MYB |
Protein Properties |
Length: 261aa MW: 27751.5 Da PI: 8.7041 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.3G237700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 56.4 | 7.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+lv +++ +G g+W++ ++ g+ R++k+c++rw +yl
Sevir.3G237700.1.p 14 KGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61
79******************************99************97 PP
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2 | Myb_DNA-binding | 58.1 | 2e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T eEdel+++++++lG++ W++Ia ++ gRt++++k++w+++
Sevir.3G237700.1.p 67 RGNFTDEEDELIIRLHALLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 261 aa
Download sequence Send
to blast |
MGRSPCCEKA HTNKGAWTKE EDERLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDEEDELIIR LHALLGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLARG 120 IDPQTHRPLG AGGAGADAAA ATGIAAHRAA ALLHPAAAAP ASPVALAVIK PAPAESSDDG 180 GRSSSSSGGA STGEPRCPDL NLDLSVGLPA ADTPTSQPQP VVCLCYRLGL RAGEACGCQA 240 DKPGPQGFRY FRPLEQGQYI *
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF372521 | 0.0 | EF372521.1 Saccharum officinarum MYB protein mRNA, complete cds. |