|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sevir.3G229900.5.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
bZIP |
Protein Properties |
Length: 454aa MW: 50036.2 Da PI: 5.2898 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.3G229900.5.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 35.9 | 1.6e-11 | 198 | 227 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33
k err+++NReAAr+sR+RKka++++Le+
Sevir.3G229900.5.p 198 AKTERRLAQNREAARKSRLRKKAYVQQLET 227
799*************************97 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 454 aa
Download sequence Send
to blast |
MAQGEESSWW VTSDHGRALP FSQALACGIQ SHAPAARPAN FLELQPSATA YFGELEEALI 60 HGSCTSIDPS MIGRDVDTEC NKTAGYLAAR PPTLEIFPSW PMSHLQQPYS GNSHSVGSTS 120 ESSSGQNAMP QAELVSPGSM RADSGQQQEV LMVTVDDYNY EQGLGVAATT APIFQQHTES 180 QDKRKQGSTR KDGKLLDAKT ERRLAQNREA ARKSRLRKKA YVQQLETSRI RLQQIEQELQ 240 GARSQGLFPG GGSASGDMNS GALMFDMEYA RWLEDDSKHM TQLQGILQAQ NIDANLGTIV 300 EECMRHYDEL FHLRAMLARS DVFHLMTGLW ATTAERCFLW MGGFRPSEIL KMLIPQLDPL 360 TEQQLLGMCN LQRSSEQTEE ALVQGLQQLH KSLADAVGAS PLSDGANVAN YTALMALALD 420 RLDTLESFYR QVSIYSHGRA TFFFFFGNVA VQP*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Cheng CH, et al.
A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] - Chern M, et al.
Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]
|