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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.3G229900.4.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
bZIP |
Protein Properties |
Length: 432aa MW: 48135.2 Da PI: 6.8888 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.3G229900.4.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 36 | 1.5e-11 | 119 | 148 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33
k err+++NReAAr+sR+RKka++++Le+
Sevir.3G229900.4.p 119 AKTERRLAQNREAARKSRLRKKAYVQQLET 148
799*************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 432 aa
Download sequence Send
to blast |
MYAAAGYLAA RPPTLEIFPS WPMSHLQQPY SGNSHSVGST SESSSGQNAM PQAELVSPGS 60 MRADSGQQQE VLMVTVDDYN YEQGLGVAAT TAPIFQQHTE SQDKRKQGST RKDGKLLDAK 120 TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQIEQEL QGARSQGLFP GGGSASGDMN 180 SGALMFDMEY ARWLEDDSKH MTQLQGILQA QNIDANLGTI VEECMRHYDE LFHLRAMLAR 240 SDVFHLMTGL WATTAERCFL WMGGFRPSEI LKMLIPQLDP LTEQQLLGMC NLQRSSEQTE 300 EALVQGLQQL HKSLADAVGA SPLSDGANVA NYTALMALAL DRLDTLESFY RQADNLRQQT 360 LHHMRRLLTT RQTARCFLSI GEYHRRLRAL SSVWASRPLE SFVAAAENVS PTGTAEQAIH 420 HPYHQSQFSG F*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Cheng CH, et al.
A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] - Chern M, et al.
Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]
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