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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.3G229900.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
bZIP |
Protein Properties |
Length: 510aa MW: 56518.4 Da PI: 6.268 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.3G229900.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 35.7 | 1.8e-11 | 197 | 226 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33
k err+++NReAAr+sR+RKka++++Le+
Sevir.3G229900.2.p 197 AKTERRLAQNREAARKSRLRKKAYVQQLET 226
699*************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 510 aa
Download sequence Send
to blast |
MAQGEESSWW VTSDHGRALP FSQALACGIQ SHAPAARPAN FLELQPSATA YFGELEEALI 60 HGSCTSIDPS MIGRDVDTEC NKTGYLAARP PTLEIFPSWP MSHLQQPYSG NSHSVGSTSE 120 SSSGQNAMPQ AELVSPGSMR ADSGQQQEVL MVTVDDYNYE QGLGVAATTA PIFQQHTESQ 180 DKRKQGSTRK DGKLLDAKTE RRLAQNREAA RKSRLRKKAY VQQLETSRIR LQQIEQELQG 240 ARSQGLFPGG GSASGDMNSG ALMFDMEYAR WLEDDSKHMT QLQGILQAQN IDANLGTIVE 300 ECMRHYDELF HLRAMLARSD VFHLMTGLWA TTAERCFLWM GGFRPSEILK MLIPQLDPLT 360 EQQLLGMCNL QRSSEQTEEA LVQGLQQLHK SLADAVGASP LSDGANVANY TALMALALDR 420 LDTLESFYRQ ADNLRQQTLH HMRRLLTTRQ TARCFLSIGE YHRRLRALSS VWASRPLESF 480 VAAAENVSPT GTAEQAIHHP YHQSQFSGF*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Cheng CH, et al.
A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] - Chern M, et al.
Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]
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