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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sevir.3G228400.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
MYB |
Protein Properties |
Length: 395aa MW: 42687.1 Da PI: 9.5384 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.3G228400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 40.2 | 7.7e-13 | 76 | 118 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
T +Ed l + vk+lG + W+ Ia+ ++ R +kqc++rw+++l
Sevir.3G228400.1.p 76 TLDEDRSLEKHVKKLGEKKWSMIAKNLP-DRIGKQCRERWLNHL 118
789*************************.*************97 PP
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2 | Myb_DNA-binding | 44.7 | 3e-14 | 126 | 167 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+WT+ E++ +v +++++G++ W++ a++++ R+++++k++w+
Sevir.3G228400.1.p 126 AWTEKEEKVIVALHRKHGNK-WAKMAKRIPGVRSDNSIKNHWN 167
8*******************.*********77**********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MSILLGKTMS RKMARFRNKM LPIFRVPAAD GGLGYGGAIC GNHALLGNTV PSENTLVSQV 60 NAEEDARTYN QRGQRTLDED RSLEKHVKKL GEKKWSMIAK NLPDRIGKQC RERWLNHLSP 120 DIKTTAWTEK EEKVIVALHR KHGNKWAKMA KRIPGVRSDN SIKNHWNATR RWLEAKCRSK 180 TIETAAVRKA TLSMVLELYI RELRDNGKLK VAGAPASAAA DPSMLDDDAA SASWQADDNP 240 AVAEPSSVVA AHAVRRHAAS LPPPMMEAPE PTQDHVYATY DADGYVRYVH LQPTPGHSSA 300 PVNQAAAATA AGYYNPLLFP YYPFGGQQVY GHATCPAGSY YQEAGPSHRY INSGAGGDEA 360 HGDAGFDPAA PGLAGMPFSA NAPAGQNQRG GGAI*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1mse_C | 1e-34 | 72 | 171 | 4 | 102 | C-Myb DNA-Binding Domain |
1msf_C | 1e-34 | 72 | 171 | 4 | 102 | C-Myb DNA-Binding Domain |