PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G225700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 565aa    MW: 60468.7 Da    PI: 8.4713
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G225700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.8e-103383751954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  Sevir.3G225700.1.p 338 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 375
                         554458******************************98 PP
2BELL98.94e-32205274372
                BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +e q +k++L+sl+e V++rYkqy++qlq vissFe+vagl +a+p++s+Al+++S+hF+cLk +i +q+
  Sevir.3G225700.1.p 205 AEQQWRKTRLISLMEDVCRRYKQYYQQLQSVISSFETVAGLSNAAPFASMALRTMSKHFKCLKGMILNQL 274
                         58899*************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.2E-39135272IPR006563POX domain
PfamPF075265.9E-38140270IPR006563POX domain
PROSITE profilePS5007112.487316379IPR001356Homeobox domain
SMARTSM003892.9E-11319383IPR001356Homeobox domain
CDDcd000864.86E-14319380No hitNo description
SuperFamilySSF466894.71E-17321386IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28322383IPR009057Homeodomain-like
PfamPF059204.9E-19336375IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MSSAAGGGYG GGAAEHQHLL LGQAAGQLYH VPQHSRREKL RFPPDPAGSP PAAAWPAPPP  60
FYSYASSSTS SYSPHSPAPL ANAQLVAHAL PAGAGAQIPS QSFALSLSSA SSNPPPAPRR  120
QLAAVVATGP YGPFTGYAAV LGRSRFLGPA QKLLEEICDV GGRPAQADRL SDDGLLDMDA  180
MDAAGDHDMD GGERAAAEAV AVSGAEQQWR KTRLISLMED VCRRYKQYYQ QLQSVISSFE  240
TVAGLSNAAP FASMALRTMS KHFKCLKGMI LNQLRNTSKV AANDGIGKED MANFALMGGG  300
SGLLRGNSVN AFGQPHNIWR PQRGLPERAV SVLRSWLFEH FLHPYPTDSD KQMLAKQTGL  360
TRNQVSNWFI NARVRLWKPM VEEIHNLEMR QQHKNPSLDK NQMGMQQTQH SSDSSGKPSD  420
PSSSQRGQNS GTTTRNLSSP ASRHILQDEL SQMPHDMPGQ VSFAYNGLAT HHGLALSHSH  480
PQQAEGISAG GATANGGVSL TLGLHQNNRT YIAEPLPAAL PLNLAHRFGL EDVSDAYVMG  540
SFGGQDRHFT KEIGGHHLVH DFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-16325383563Homeobox protein Meis2
4xrm_B1e-16325383563Homeobox protein Meis2
4xrs_A1e-16325382158Homeobox protein Meis1
4xrs_B1e-16325382158Homeobox protein Meis1
5bng_A1e-16325383159Homeobox protein Meis2
5bng_B1e-16325383159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G225700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961888.10.0BEL1-like homeodomain protein 9
TrEMBLK3Z5080.0K3Z508_SETIT; Uncharacterized protein
STRINGSi021626m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.13e-76TALE family protein