PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G207300.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Protein Properties

Length: 279aa MW: 31396 Da PI: 9.4499

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G207300.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.4	2.6e-18	141	228	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k++++s+v++ +l lp +f++++ ++ +++ ++lede+g +++ + +k+ + l++GW++F+ ++L++gD++vF+l ++++f Sevir.3G207300.3.p 141 FVKTMVRSHVSSCFWLGLPTSFCKQNL-PP-TEFRMVLEDEDGVEFDAIY--IGKRTG--LSGGWRGFAMHHNLEDGDSLVFELAEHDRF- 224 89*******************8885.43.5689***********..555544..*********************9987888. PP .EEEE CS B3 92 lvvkv 96 ++ + Sevir.3G207300.3.p 225 -KIYI 228 .5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.35E-23	134	230	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.6E-20	135	230	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.88E-26	139	230	No hit	No description
PROSITE profile	PS50863	12.28	141	232	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-21	141	232	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-17	141	229	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MATKASSAAS GAAYEEQRRK RVLENLKHLE DLGISEMSKS LLQAARLQKQ SKGGVRVSPK 60 ARKKFDATEV RRSSRAKATV SYKDDYGELD TFLRRKRRSG GKNSEQGREY TGRVSSYEQQ 120 QRAFRRAEKL QDGLDPNNPS FVKTMVRSHV SSCFWLGLPT SFCKQNLPPT EFRMVLEDED 180 GVEFDAIYIG KRTGLSGGWR GFAMHHNLED GDSLVFELAE HDRFKIYIIK AIDDDDVEED 240 ESDDKNASGG TKEEPAEEDS PAAEPPKGAK RRKLRGRR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	271	PKGAKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G207300.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040217	0.0	BT040217.1 Zea mays full-length cDNA clone ZM_BFc0072G10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012700381.2	0.0	B3 domain-containing protein Os05g0481400
Swissprot	Q5KQI4	1e-132	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A368QIV7	0.0	A0A368QIV7_SETIT; Uncharacterized protein
TrEMBL	K3Z8P6	0.0	K3Z8P6_SETIT; Uncharacterized protein
STRING	Si022916m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	3e-43	B3 family protein

Link Out ? help Back to Top
Phytozome	Sevir.3G207300.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]