PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.3G207300.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 279aa MW: 31396 Da PI: 9.4499 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.4 | 2.6e-18 | 141 | 228 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k++++s+v++ +l lp +f++++ ++ +++ ++lede+g +++ + +k+ + l++GW++F+ ++L++gD++vF+l ++++f Sevir.3G207300.3.p 141 FVKTMVRSHVSSCFWLGLPTSFCKQNL-PP-TEFRMVLEDEDGVEFDAIY--IGKRTG--LSGGWRGFAMHHNLEDGDSLVFELAEHDRF- 224 89*********************8885.43.5689***************..555544..***********************9987888. PP .EEEE CS B3 92 lvvkv 96 ++ + Sevir.3G207300.3.p 225 -KIYI 228 .5555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.35E-23 | 134 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-20 | 135 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.88E-26 | 139 | 230 | No hit | No description |
PROSITE profile | PS50863 | 12.28 | 141 | 232 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-21 | 141 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-17 | 141 | 229 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MATKASSAAS GAAYEEQRRK RVLENLKHLE DLGISEMSKS LLQAARLQKQ SKGGVRVSPK 60 ARKKFDATEV RRSSRAKATV SYKDDYGELD TFLRRKRRSG GKNSEQGREY TGRVSSYEQQ 120 QRAFRRAEKL QDGLDPNNPS FVKTMVRSHV SSCFWLGLPT SFCKQNLPPT EFRMVLEDED 180 GVEFDAIYIG KRTGLSGGWR GFAMHHNLED GDSLVFELAE HDRFKIYIIK AIDDDDVEED 240 ESDDKNASGG TKEEPAEEDS PAAEPPKGAK RRKLRGRR* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 265 | 271 | PKGAKRR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.3G207300.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT040217 | 0.0 | BT040217.1 Zea mays full-length cDNA clone ZM_BFc0072G10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012700381.2 | 0.0 | B3 domain-containing protein Os05g0481400 | ||||
Swissprot | Q5KQI4 | 1e-132 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | A0A368QIV7 | 0.0 | A0A368QIV7_SETIT; Uncharacterized protein | ||||
TrEMBL | K3Z8P6 | 0.0 | K3Z8P6_SETIT; Uncharacterized protein | ||||
STRING | Si022916m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58280.1 | 3e-43 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.3G207300.3.p |
Publications ? help Back to Top | |||
---|---|---|---|
|